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MF547662.1__AUO78387.1__LIBA6276_00169__00169

Bact-Vir

MF547662.1__AUO78387.1__LIBA6276_00169__00169

Identity

Accession:
MF547662 ↗
Kingdom:
phage

Quality

74.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Clostridioides_phage_LIBA6276

TaxID: 2069614

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-94
PDB
Domain cluster: rep: gwa1_scaffold_31_prodigal-single.1__X__X__00034__D7-87
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.80 74.0 7.19e-01 100.0% 97.8%
2knrA00 3.40.1530.20 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › Protein of unknown function (DUF1491) 0.63 39.0 3.53e-01 100.0% 44.1%
6kxkG01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.62 47.0 4.08e-01 83.3% 51.1%
6kxkB02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.61 42.0 3.62e-01 77.4% 44.4%
4f07E00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 47.0 3.91e-01 92.9% 51.0%
1hqz800 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.57 37.0 3.21e-01 100.0% 43.2%
3omzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 41.0 3.87e-01 77.4% 65.7%
4jx0A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 36.0 3.06e-01 73.8% 38.5%
6ovnB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.56e-01 77.4% 62.4%
1dleA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 36.0 3.20e-01 70.2% 78.3%
5ek8A01 2.60.40.3330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 40.0 3.52e-01 82.1% 53.2%
4p2qE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 3.51e-01 77.4% 61.2%
7aj6H01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.58e-01 83.3% 65.5%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3963488 821.1.1.7 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG 0.83 78.0 6.95e-01 100.0% 81.7%
4977317 821.1.1.9 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.77 66.0 5.80e-01 98.8% 64.7%
4945828 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.76 67.0 6.59e-01 100.0% 88.9%
3505268 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.75 70.0 5.88e-01 100.0% 84.4%
3894548 11.1.1.974 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_VWDE 0.72 48.0 4.26e-01 77.4% 48.3%
4136832 11.1.4.13 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › P_gingi_FimA 0.62 45.0 3.85e-01 88.1% 47.4%
3581700 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.61 44.0 3.68e-01 77.4% 45.0%
3519899 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.61 44.0 3.71e-01 82.1% 45.7%
5039141 10.1.2.184 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PepX_C 0.55 42.0 3.49e-01 82.1% 50.0%
5054036 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.55 43.0 3.22e-01 84.5% 96.7%
3512065 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 34.0 3.81e-01 72.6% 81.5%
3490466 73.1.1.6 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.54 37.0 3.18e-01 82.1% 45.2%
3595483 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.53 44.0 3.14e-01 91.7% 47.9%
3702626 206.1.3.46 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_IQCH 0.53 44.0 3.15e-01 91.7% 46.3%
4971848 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.51 40.0 2.88e-01 90.5% 37.9%
3167596 3662.1.1.2 ↗ a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › POC3_POC4 0.50 39.0 3.13e-01 85.7% 83.2%
D2 high residues 112-182
PDB