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MF547663.1__AUO78520.1__LIBA2945_00130__00130

Bact-Vir

MF547663.1__AUO78520.1__LIBA2945_00130__00130

Identity

Accession:
MF547663 ↗
Kingdom:
phage

Quality

87.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-62
PDB
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 54.0 5.07e-01 90.2% 57.5%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 53.0 4.81e-01 85.2% 57.5%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 46.0 4.72e-01 90.2% 67.8%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.71 50.0 3.74e-01 91.8% 31.0%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 44.0 4.27e-01 82.0% 57.4%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.69 60.0 5.19e-01 100.0% 62.8%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 44.0 4.03e-01 88.5% 50.0%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.69 49.0 5.30e-01 98.4% 95.8%
1go3E02 3.30.1490.120 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain 0.68 60.0 5.50e-01 100.0% 85.2%
3p26A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.68 59.0 4.91e-01 100.0% 60.9%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.67 56.0 4.61e-01 100.0% 54.8%
2cg7A02 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.66 42.0 4.74e-01 95.1% 90.9%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.66 44.0 3.01e-01 90.2% 19.6%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 48.0 4.53e-01 100.0% 64.0%
3e1yE01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.66 53.0 4.78e-01 100.0% 64.0%
3mcaA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.66 55.0 4.74e-01 100.0% 57.8%
7d58G01 3.30.1490.120 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain 0.65 57.0 5.36e-01 100.0% 92.0%
1qzzA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 50.0 3.63e-01 96.7% 30.2%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.65 55.0 4.19e-01 100.0% 48.1%
1r5bA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 56.0 4.67e-01 100.0% 60.9%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 45.0 3.67e-01 82.0% 38.0%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.64 55.0 4.19e-01 100.0% 51.9%
2cc6A00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.64 55.0 5.43e-01 100.0% 90.6%
2lwyA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.64 51.0 4.03e-01 91.8% 88.4%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 53.0 4.14e-01 100.0% 44.2%
1el6A02 2.20.20.20 Mainly Beta › Single Sheet › Anthopleurin-A › Baseplate structural protein gp11, C-terminal domain 0.62 43.0 4.66e-01 95.1% 93.6%
1wxrA03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 46.0 4.32e-01 93.4% 64.5%
4e2aA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 42.0 3.10e-01 96.7% 25.9%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 48.0 4.25e-01 100.0% 61.1%
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.59 52.0 4.07e-01 98.4% 53.1%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.59 38.0 3.79e-01 72.1% 62.5%
2wzpP01 2.40.30.210 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.59 49.0 4.15e-01 98.4% 70.6%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.58 52.0 3.55e-01 100.0% 44.8%
6ruiB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.57 50.0 3.95e-01 96.7% 84.1%
1ygyA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 42.0 4.04e-01 100.0% 69.7%
2cqiA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 44.0 3.82e-01 100.0% 53.4%
5c94A00 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.56 42.0 3.56e-01 96.7% 45.7%
1t6eX01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.55 44.0 3.33e-01 95.1% 100.0%
4j37A02 3.30.70.660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.54 46.0 3.34e-01 100.0% 48.4%
2vzyC00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 41.0 2.99e-01 100.0% 28.0%
1gh8A00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.54 46.0 4.13e-01 100.0% 67.4%
2wyhA05 2.60.40.2210 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 47.0 3.67e-01 100.0% 61.9%
6mv2A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 45.0 3.92e-01 100.0% 75.5%
2nwvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.53 29.0 2.38e-01 75.4% 28.6%
2go8A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 39.0 3.75e-01 100.0% 68.9%
3u9sE04 3.30.700.40 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.52 40.0 3.34e-01 90.2% 60.0%
2f7vA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 46.0 3.80e-01 100.0% 77.8%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3999723 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 50.0 3.68e-01 83.6% 25.3%
4002896 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 47.0 4.16e-01 85.2% 43.3%
3521904 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 52.0 4.51e-01 90.2% 47.4%
3877938 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 48.0 4.18e-01 85.2% 44.4%
3926950 4.1.1.214 beta barrels › SH3 › SH3 › SH3 › GCN5L1 0.74 51.0 4.05e-01 83.6% 36.7%
4020093 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 54.0 4.12e-01 91.8% 34.8%
3883161 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 49.0 4.31e-01 91.8% 46.7%
3497989 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 52.0 5.29e-01 91.8% 76.7%
3615541 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 64.0 5.10e-01 100.0% 56.0%
3621303 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 52.0 4.05e-01 90.2% 35.4%
5055336 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.72 59.0 5.24e-01 100.0% 62.2%
3768095 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 48.0 4.12e-01 91.8% 44.2%
3303889 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.71 49.0 4.63e-01 91.8% 60.0%
3656401 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 49.0 4.58e-01 85.2% 58.7%
4524466 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 46.0 4.44e-01 85.2% 58.6%
4420173 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.70 47.0 4.47e-01 88.5% 57.3%
3883159 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 46.0 4.05e-01 91.8% 45.6%
2157301 4.1.1.78 beta barrels › SH3 › SH3 › SH3 › TTD 0.70 50.0 4.76e-01 82.0% 64.4%
3219717 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.70 57.0 5.07e-01 100.0% 62.2%
3596676 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 46.0 4.08e-01 90.2% 46.7%
4966530 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.69 55.0 5.34e-01 100.0% 77.1%
3602381 4.1.1.403 beta barrels › SH3 › SH3 › SH3 › UPF0179 0.69 60.0 5.65e-01 100.0% 96.0%
3942928 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.68 59.0 5.35e-01 100.0% 71.8%
3665168 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.68 60.0 4.83e-01 100.0% 64.2%
3294392 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.68 42.0 3.86e-01 83.6% 44.7%
1563513 1.1.8.10 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Ski7_3rd 0.68 57.0 4.74e-01 100.0% 53.3%
5080510 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.68 59.0 5.10e-01 100.0% 63.2%
3219406 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 49.0 5.34e-01 90.2% 96.0%
3629536 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 48.0 4.15e-01 88.5% 48.4%
3851361 4.1.1.78 beta barrels › SH3 › SH3 › SH3 › TTD 0.67 50.0 4.21e-01 82.0% 54.3%
3814411 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 49.0 4.20e-01 91.8% 47.6%
4952573 1.1.13.74 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › UPF0179 0.66 57.0 5.40e-01 100.0% 96.0%
5003311 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.66 55.0 4.51e-01 96.7% 50.9%
3943282 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.66 55.0 4.58e-01 100.0% 56.7%
3949052 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 54.0 4.83e-01 100.0% 64.4%
140913 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.66 55.0 4.77e-01 100.0% 59.0%
4171942 4.1.1.178 beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.65 45.0 3.82e-01 82.0% 42.3%
5007131 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.65 54.0 4.76e-01 100.0% 62.1%
3968432 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.65 54.0 4.58e-01 100.0% 55.2%
4966529 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 55.0 4.73e-01 100.0% 62.1%
5052888 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 52.0 4.31e-01 100.0% 53.6%
164720 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.63 53.0 4.14e-01 100.0% 44.2%
3513366 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.63 54.0 3.97e-01 100.0% 54.9%
4247994 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.62 53.0 4.60e-01 100.0% 62.0%
4952629 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.62 54.0 4.61e-01 98.4% 67.0%
3253248 3468.1.1.0 a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain 0.62 54.0 4.26e-01 100.0% 82.3%
3784272 1.1.7.102 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF28793 0.62 56.0 4.44e-01 100.0% 69.2%
3967199 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 51.0 4.45e-01 100.0% 61.0%
4952430 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.61 52.0 4.39e-01 100.0% 62.7%
3954082 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.60 34.0 2.61e-01 95.1% 24.3%
4809346 1.1.13.57 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 0.60 50.0 4.52e-01 96.7% 81.4%
3650582 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 49.0 4.74e-01 100.0% 81.2%
5040464 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 47.0 4.18e-01 100.0% 61.1%
3798057 304.18.1.0 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS 0.57 50.0 4.17e-01 100.0% 64.5%
3837951 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.57 43.0 3.94e-01 100.0% 60.0%
1117606 1.1.13.17 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N 0.57 47.0 3.81e-01 100.0% 56.0%
5038766 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.57 50.0 4.61e-01 100.0% 100.0%
4020238 1.1.7.4 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_1 0.56 47.0 3.64e-01 100.0% 40.7%
4958145 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.55 47.0 3.12e-01 95.1% 39.2%
3585212 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.55 47.0 3.26e-01 98.4% 30.2%
3266698 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.54 39.0 3.05e-01 77.0% 47.4%
3496425 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.54 48.0 3.59e-01 100.0% 43.3%
3882596 223.1.1.101 a+b three layers › Profilin-like › sensor domains › sensor domains › PF30734 0.54 45.0 2.97e-01 95.1% 31.6%
3310464 375.1.1.69 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 0.54 39.0 4.24e-01 100.0% 98.0%
4964846 223.1.1.24 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.53 45.0 3.55e-01 96.7% 73.1%
3473597 7.1.1.1 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.52 47.0 3.93e-01 100.0% 85.7%
4235653 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.52 46.0 4.14e-01 100.0% 83.5%
3908765 7.1.1.1 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.51 44.0 3.85e-01 100.0% 90.5%
3704437 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.50 42.0 3.42e-01 100.0% 90.0%