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MF595878.1__ATB52704.1__X__00017
Bact-VirMF595878.1__ATB52704.1__X__00017
Identity
- Accession:
- MF595878 ↗
- Kingdom:
- phage
Quality
78.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-72
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09466.17 best | Yqai | 44.3 | 2.20e-11 | 100.0% | 66.7% |
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fysA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.69 | 46.0 | 3.31e-01 | 70.0% | 25.5% |
| 5i8gA03 | 2.10.110.40 | Mainly Beta › Ribbon › Cysteine Rich Protein › CREB-binding protein/p300 RING domain | 0.69 | 61.0 | 5.73e-01 | 100.0% | 95.1% |
| 4x9xA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.68 | 46.0 | 3.32e-01 | 70.0% | 25.5% |
| 1j2oA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.67 | 55.0 | 4.38e-01 | 98.0% | 89.5% |
| 3jr7A02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.67 | 44.0 | 4.81e-01 | 70.0% | 97.4% |
| 2g7zA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.67 | 45.0 | 3.23e-01 | 70.0% | 25.2% |
| 3q8dA02 | 1.20.1440.120 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Recombination protein O, C-terminal domain | 0.67 | 47.0 | 3.33e-01 | 94.0% | 24.7% |
| 2ox7A02 | 2.30.30.290 | Mainly Beta › Roll › SH3 type barrels. › YopX-like domains | 0.65 | 44.0 | 3.99e-01 | 100.0% | 52.2% |
| 4dxaB01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.63 | 44.0 | 3.54e-01 | 74.0% | 52.6% |
| 4uf0A03 | 2.10.110.20 | Mainly Beta › Ribbon › Cysteine Rich Protein › | 0.61 | 52.0 | 4.82e-01 | 100.0% | 81.5% |
| 3kalB05 | 3.30.1490.50 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain | 0.60 | 40.0 | 3.86e-01 | 70.0% | 62.7% |
| 2nydA02 | 2.20.28.300 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.59 | 40.0 | 4.32e-01 | 72.0% | 92.7% |
| 2j58A02 | 3.10.560.10 | Alpha Beta › Roll › Outer membrane lipoprotein wza fold like › Outer membrane lipoprotein wza domain like | 0.58 | 39.0 | 3.21e-01 | 70.0% | 44.2% |
| 1x4rA01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.58 | 39.0 | 3.44e-01 | 70.0% | 81.0% |
| 4lorA03 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.58 | 42.0 | 3.27e-01 | 78.0% | 35.3% |
| 2ds5A00 | 6.20.220.10 | Special › Other non-globular › Erythroid Transcription Factor GATA-1; Chain A › ClpX chaperone, C4-type zinc finger domain | 0.56 | 39.0 | 4.02e-01 | 74.0% | 90.7% |
| 2e5rA00 | 3.30.60.90 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Zinc finger, ZZ-type | 0.55 | 44.0 | 4.21e-01 | 100.0% | 88.9% |
| 5ujeA01 | 3.30.1760.10 | Alpha Beta › 2-Layer Sandwich › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 | 0.54 | 40.0 | 3.24e-01 | 84.0% | 64.9% |
| 5e7qA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.53 | 45.0 | 2.70e-01 | 100.0% | 19.7% |
| 2jveA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.52 | 41.0 | 3.88e-01 | 100.0% | 88.7% |
| 3i3vB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 38.0 | 2.79e-01 | 88.0% | 92.9% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4214386 | 2010.1.1.1 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV | 0.72 | 48.0 | 3.41e-01 | 70.0% | 23.9% |
| 4027754 | 376.1.1.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ | 0.71 | 61.0 | 6.11e-01 | 98.0% | 96.0% |
| 4362539 | 2010.1.1.1 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV | 0.71 | 47.0 | 3.38e-01 | 70.0% | 23.9% |
| 3588327 | 2010.1.1.1 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV | 0.71 | 47.0 | 3.39e-01 | 70.0% | 24.7% |
| 3807426 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.71 | 61.0 | 5.41e-01 | 100.0% | 85.3% |
| 4946420 | 376.1.1.180 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ResIII | 0.71 | 61.0 | 5.57e-01 | 96.0% | 90.8% |
| 4451316 | 2010.1.1.1 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV | 0.69 | 47.0 | 3.32e-01 | 70.0% | 25.2% |
| 4001126 | 376.1.1.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ | 0.67 | 57.0 | 5.74e-01 | 98.0% | 98.0% |
| 4990542 | 377.1.1.128 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF2175 | 0.67 | 46.0 | 4.83e-01 | 74.0% | 88.9% |
| 1413915 | 377.1.1.27 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › KDM6_GATAL | 0.66 | 54.0 | 4.81e-01 | 98.0% | 62.7% |
| 3964717 | 377.1.1.11 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C | 0.65 | 52.0 | 3.67e-01 | 94.0% | 27.5% |
| 4380981 | 377.1.1.11 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C | 0.65 | 50.0 | 3.58e-01 | 94.0% | 27.7% |
| None | — | 0.64 | 55.0 | 3.89e-01 | 100.0% | 62.4% | |
| None | — | 0.63 | 54.0 | 3.69e-01 | 100.0% | 54.7% | |
| 4440681 | 377.1.1.11 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C | 0.63 | 45.0 | 3.26e-01 | 96.0% | 25.2% |
| 3519254 | 6171.1.1.0 ↗ | alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases | 0.62 | 52.0 | 3.64e-01 | 100.0% | 57.8% |
| 2507397 | 2010.1.1.1 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV | 0.62 | 41.0 | 3.02e-01 | 70.0% | 25.2% |
| 219752 | 377.1.1.25 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LID | 0.61 | 47.0 | 4.07e-01 | 90.0% | 59.3% |
| 1868260 | 376.1.1.5 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP | 0.60 | 49.0 | 3.92e-01 | 96.0% | 43.6% |
| None | — | 0.57 | 38.0 | 2.41e-01 | 70.0% | 12.1% | |
| 5006888 | 304.22.1.2 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › PF26257 | 0.56 | 45.0 | 4.12e-01 | 96.0% | 100.0% |
| 5062217 | 4012.1.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase | 0.56 | 40.0 | 3.91e-01 | 78.0% | 70.9% |
| 4938855 | 5103.1.1.0 ↗ | a/b three-layered sandwiches › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 › Insert domain in hypothetical protein PF0380 | 0.53 | 36.0 | 2.97e-01 | 70.0% | 86.0% |
| 5007944 | 377.1.1.126 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Arc_trans_TRASH | 0.53 | 38.0 | 4.05e-01 | 80.0% | 97.5% |
| None | — | 0.51 | 43.0 | 2.84e-01 | 100.0% | 59.8% |