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MF595878.1__ATB52742.1__X__00055

Bact-Vir

MF595878.1__ATB52742.1__X__00055

Identity

Accession:
MF595878 ↗
Kingdom:
phage

Quality

94.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Caldibacillus_phage_CBP1

TaxID: 2036768

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-57
PDB
Domain cluster: rep: OP341626.1__UYL93985.1__PK35_gp20__00020__D2-59
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 63.0 6.40e-01 100.0% 94.5%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 54.0 5.15e-01 100.0% 71.2%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 53.0 5.01e-01 96.4% 69.7%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 49.0 5.20e-01 92.9% 89.8%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 57.0 5.18e-01 98.2% 80.8%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 54.0 5.18e-01 96.4% 86.2%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 56.0 5.07e-01 100.0% 81.3%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 53.0 4.75e-01 96.4% 82.3%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 54.0 4.68e-01 100.0% 64.0%
2q5fA02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.61 51.0 3.97e-01 98.2% 100.0%
3pggA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 53.0 4.76e-01 98.2% 80.8%
2z8lA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.61 43.0 3.37e-01 100.0% 35.9%
6v4xC01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 52.0 4.36e-01 100.0% 59.0%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 52.0 4.83e-01 100.0% 83.1%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 48.0 4.38e-01 100.0% 87.5%
3jr7A02 2.20.28.50 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain 0.55 36.0 4.08e-01 96.4% 100.0%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.55 49.0 3.80e-01 100.0% 75.0%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 45.0 3.83e-01 100.0% 55.2%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.54 37.0 3.43e-01 73.2% 100.0%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.53 36.0 3.54e-01 100.0% 65.6%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 46.0 3.46e-01 100.0% 42.3%
4jndA02 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 38.0 2.54e-01 83.9% 33.8%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.52 45.0 3.36e-01 100.0% 85.6%
3vynA01 2.60.40.3780 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.49e-01 100.0% 56.3%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 3.21e-01 100.0% 39.7%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5027750 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 57.0 5.80e-01 98.2% 89.1%
4123180 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.71 55.0 4.95e-01 100.0% 62.7%
4658938 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.70 54.0 4.64e-01 100.0% 52.2%
4359892 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.70 55.0 4.86e-01 100.0% 60.0%
1263519 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.69 53.0 5.13e-01 100.0% 74.2%
5005252 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 52.0 5.69e-01 96.4% 100.0%
4964211 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 56.0 5.94e-01 94.6% 100.0%
4662294 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 51.0 5.18e-01 94.6% 81.8%
4451993 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 51.0 5.04e-01 98.2% 78.3%
4033484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 56.0 5.34e-01 98.2% 85.9%
3603549 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 56.0 5.03e-01 100.0% 73.1%
4031509 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 48.0 4.71e-01 94.6% 76.7%
3624163 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 56.0 4.78e-01 100.0% 62.2%
5025086 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.62 53.0 5.40e-01 100.0% 98.2%
2028252 3986.2.1.1 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd › Dmd 0.61 49.0 4.69e-01 100.0% 76.6%
5040690 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 45.0 3.80e-01 100.0% 47.4%
5078711 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 43.0 3.43e-01 78.6% 68.3%
3272363 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.59 52.0 4.42e-01 100.0% 63.2%
3426874 2487.1.1.7 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.59 49.0 3.84e-01 98.2% 96.3%
3662909 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.58 49.0 3.79e-01 98.2% 97.8%
3682498 7542.1.1.5 ↗ a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › PA 0.58 50.0 3.79e-01 100.0% 98.6%
3441052 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.58 49.0 3.78e-01 98.2% 99.3%
4026408 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.57 49.0 4.07e-01 98.2% 54.0%
4941559 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 48.0 4.09e-01 96.4% 100.0%
2393360 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 40.0 3.24e-01 76.8% 67.2%
3814436 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.56 46.0 3.76e-01 98.2% 99.2%
3854758 4357.1.1.5 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_4 0.55 43.0 4.12e-01 87.5% 76.9%
3508990 3115.3.1.2 ↗ a+b two layers › GP2-like › P56 › P56 › DUF2922 0.54 45.0 4.38e-01 98.2% 89.1%
224066 822.3.1.1 ↗ a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 0.54 37.0 3.43e-01 73.2% 98.7%
2989723 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.52 42.0 4.04e-01 100.0% 88.7%
3510040 3115.3.1.2 ↗ a+b two layers › GP2-like › P56 › P56 › DUF2922 0.52 42.0 3.85e-01 98.2% 71.2%
3590261 822.3.1.1 ↗ a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 0.51 38.0 3.69e-01 100.0% 72.1%
4237650 3325.1.1.1 ↗ a+b two layers › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrB-binding domain of UvrA › UvrA_inter 0.51 38.0 3.12e-01 82.1% 93.0%
4989696 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.51 43.0 3.49e-01 100.0% 64.3%
5042087 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.50 40.0 3.71e-01 100.0% 68.0%
3658946 304.7.1.2 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 0.50 44.0 3.83e-01 98.2% 82.4%