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MF614627.1__ATE84627.1__phi2LM21_p10__00010

Bact-Vir

MF614627.1__ATE84627.1__phi2LM21_p10__00010

Identity

Accession:
MF614627 ↗
Kingdom:
phage

Quality

85.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-49
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.77 66.0 5.61e-01 100.0% 73.7%
1r9wA00 3.40.1310.10 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.75 62.0 4.51e-01 100.0% 55.1%
1f08B00 3.40.1310.10 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.74 63.0 4.47e-01 100.0% 52.4%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.73 62.0 6.07e-01 97.8% 90.0%
2xzmP00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 55.0 3.82e-01 84.4% 29.1%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.70 59.0 4.42e-01 100.0% 52.9%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.69 61.0 5.39e-01 100.0% 78.5%
7bv5D01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.69 57.0 3.99e-01 100.0% 39.3%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.67 56.0 4.51e-01 100.0% 57.3%
1wgyA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.66 55.0 4.71e-01 97.8% 80.3%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 50.0 4.25e-01 100.0% 50.0%
4d2kB00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.65 54.0 4.62e-01 100.0% 81.2%
4g84A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.64 47.0 2.92e-01 88.9% 30.9%
5utkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 47.0 3.91e-01 100.0% 43.3%
1w5rA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.62 48.0 3.35e-01 91.1% 78.0%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.62 49.0 4.12e-01 100.0% 63.0%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.62 50.0 3.92e-01 100.0% 48.6%
3v6oA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 46.0 3.81e-01 100.0% 44.8%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.60 44.0 3.18e-01 82.2% 39.9%
2p4zA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.59 50.0 3.12e-01 100.0% 16.0%
5i47B02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.59 50.0 4.45e-01 100.0% 67.2%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.59 48.0 3.38e-01 100.0% 29.3%
3oqgA00 3.40.1440.50 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.58 45.0 3.25e-01 100.0% 36.9%
2avxA00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.58 41.0 2.87e-01 77.8% 27.5%
3nd1A02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.58 47.0 3.70e-01 100.0% 43.6%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.57 47.0 3.89e-01 100.0% 53.3%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.57 47.0 2.85e-01 97.8% 23.5%
1a9xA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.57 46.0 4.18e-01 100.0% 64.3%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.57 43.0 3.65e-01 100.0% 69.0%
4p04A01 2.60.40.3100 Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain 0.57 47.0 3.70e-01 100.0% 42.5%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.56 44.0 3.86e-01 100.0% 67.1%
1g6gB00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.56 46.0 3.45e-01 97.8% 94.4%
2czrA02 3.90.79.30 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › TBP-interacting protein, C-terminal domain 0.56 39.0 3.07e-01 100.0% 30.8%
7y8sA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 3.71e-01 100.0% 47.4%
1wmhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 42.0 3.72e-01 100.0% 94.0%
1cfbA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 3.42e-01 100.0% 40.6%
2k47A00 1.10.8.440 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Vesicular stomatitis virus phosphoprotein C-terminal domain 0.55 41.0 3.74e-01 95.6% 91.8%
4dqnA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.55 40.0 2.76e-01 77.8% 63.3%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.55 45.0 3.71e-01 100.0% 52.1%
2irmA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.54 45.0 2.79e-01 100.0% 29.8%
6l4lA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 44.0 3.36e-01 95.6% 41.4%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.54 43.0 3.82e-01 100.0% 61.8%
7ejoB01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.54 41.0 3.65e-01 100.0% 71.1%
3buxB03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 41.0 3.50e-01 91.1% 47.7%
2npnA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.51 40.0 3.23e-01 100.0% 42.2%
2vfrA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.50 40.0 2.98e-01 100.0% 32.3%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 38.0 3.49e-01 100.0% 64.4%
5u3fB01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.50 37.0 2.74e-01 82.2% 90.7%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995671 3115.1.1.12 a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.85 76.0 7.38e-01 100.0% 88.0%
3513859 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.84 75.0 7.31e-01 100.0% 98.0%
3625417 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.83 66.0 6.64e-01 86.7% 100.0%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.83 75.0 7.22e-01 100.0% 92.0%
4463006 3115.2.1.0 a+b two layers › GP2-like › GP2 › GP2 0.82 74.0 7.46e-01 97.8% 97.8%
3477651 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.82 73.0 6.81e-01 100.0% 98.2%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.81 72.0 6.04e-01 100.0% 74.7%
3968122 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.78 65.0 6.59e-01 100.0% 95.6%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.77 65.0 6.56e-01 100.0% 95.6%
3867498 2005.1.1.40 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1+tRNA-synt_1g 0.75 66.0 3.78e-01 100.0% 10.5%
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.75 62.0 6.23e-01 100.0% 95.6%
4365480 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.74 54.0 3.55e-01 77.8% 28.0%
5015713 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.73 63.0 5.80e-01 100.0% 98.3%
4583560 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 62.0 6.30e-01 97.8% 97.8%
4514749 3115.2.1.0 a+b two layers › GP2-like › GP2 › GP2 0.72 60.0 6.05e-01 95.6% 97.8%
3723416 212.1.1.12 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › UPF0029 0.70 50.0 3.58e-01 77.8% 50.0%
3917143 304.100.1.0 a+b two layers › Alpha-beta plaits › PurS-like › PurS-like 0.68 58.0 5.35e-01 100.0% 96.7%
4158495 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.67 57.0 4.62e-01 100.0% 52.2%
4997210 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.65 55.0 4.50e-01 100.0% 52.2%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.65 52.0 5.14e-01 100.0% 96.0%
3594014 2007.2.3.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.65 45.0 2.90e-01 75.6% 80.4%
4946939 862.1.1.1 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.64 49.0 3.26e-01 100.0% 19.5%
4013678 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.64 54.0 4.03e-01 100.0% 46.3%
3929121 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 55.0 4.13e-01 100.0% 42.6%
3398228 221.7.1.1 a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › E2_bind 0.62 42.0 3.34e-01 73.3% 71.0%
3642360 221.1.1.111 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiq_DUF_assoc 0.61 48.0 3.91e-01 100.0% 71.4%
3817222 221.1.1.1 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Fer2 0.61 50.0 4.18e-01 100.0% 71.9%
5046850 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.60 48.0 4.05e-01 100.0% 56.7%
3250715 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 43.0 3.00e-01 77.8% 29.4%
3672250 207.1.1.116 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.59 48.0 3.27e-01 100.0% 23.2%
3761229 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.59 48.0 3.65e-01 100.0% 87.2%
4024839 3307.1.1.0 a+b two layers › Domain in small RNA methyltransferase HEN1 › Domain in small RNA methyltransferase HEN1 › Domain in small RNA methyltransferase HEN1 0.59 52.0 3.82e-01 100.0% 76.7%
3987692 822.3.1.1 a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 0.59 48.0 4.33e-01 100.0% 65.7%
3576330 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 49.0 3.60e-01 100.0% 33.3%
3965455 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.59 46.0 3.92e-01 100.0% 55.6%
4132483 231.1.1.3 a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_1, MoCoBD_2 0.58 49.0 2.78e-01 100.0% 7.8%
3611608 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 52.0 3.14e-01 100.0% 29.3%
2870324 4012.3.1.1 a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 › Cas9_PI 0.57 44.0 4.24e-01 100.0% 93.1%
3705856 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.57 43.0 2.68e-01 84.4% 80.3%
4945733 2006.1.3.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.57 46.0 2.99e-01 100.0% 20.0%
4886249 304.130.1.1 a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.57 48.0 4.29e-01 95.6% 84.6%
3285401 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.56 46.0 4.01e-01 100.0% 62.7%
7677 4977.1.1.1 a+b complex topology › TBP-interacting protein C-terminal domain-like › TBP-interacting protein C-terminal domain-like › TBP-interacting protein C-terminal domain-like › TBPIP_C 0.56 39.0 3.09e-01 100.0% 31.4%
4935671 221.10.1.0 a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain 0.55 44.0 4.16e-01 100.0% 86.7%
3618241 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.54 43.0 3.46e-01 97.8% 75.2%
4018289 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 40.0 3.11e-01 100.0% 86.2%
3590261 822.3.1.1 a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 0.53 42.0 3.84e-01 100.0% 67.6%
3649276 887.1.1.0 a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e 0.52 38.0 2.99e-01 100.0% 33.3%
3930206 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 3.46e-01 100.0% 46.0%
4950851 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 41.0 4.11e-01 97.8% 97.8%
4931464 822.3.1.0 a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 0.51 42.0 3.70e-01 100.0% 70.7%
5076160 284.1.2.0 a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases 0.51 43.0 3.26e-01 100.0% 57.0%
3923043 4326.1.1.1 a+b two layers › ERH-like › ERH-like › ERH-like › ER 0.51 38.0 3.24e-01 100.0% 70.0%
3177860 11.1.5.98 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › SPT23_MGA2_DBD 0.50 38.0 2.68e-01 100.0% 61.9%