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MF614627.1__ATE84633.1__phi2LM21_p16__00016

Bact-Vir

MF614627.1__ATE84633.1__phi2LM21_p16__00016

Identity

Accession:
MF614627 ↗
Kingdom:
phage

Quality

75.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sinorhizobium_phage_phi2LM21

TaxID: 2029632

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-81
PDB
Domain cluster: rep: CU468217.1__CAO99330.1__X__00004__D25-94
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF13560.13 best HTH_31 29.0 1.50e-06 79.5% 51.6%
PF01381.29 HTH_3 26.3 8.30e-06 74.4% 54.5%
D2 high residues 118-262
PDB
Domain cluster: rep: MK448705.1__QBX15854.1__Javan215_0051__00005__D138-257
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00717.29 best Peptidase_S24 56.7 2.60e-15 82.8% 84.5%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ay9A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.87 57.0 6.66e-01 73.1% 89.8%
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.85 66.0 7.31e-01 96.6% 97.5%
1jheA00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.80 65.0 7.03e-01 100.0% 98.4%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 32.0 3.78e-01 97.2% 74.0%
1ksiA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 29.0 3.44e-01 96.6% 77.1%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.53 32.0 3.64e-01 83.4% 80.7%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3963450 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.88 79.0 8.18e-01 100.0% 98.5%
3965029 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.88 77.0 7.84e-01 100.0% 92.9%
4075150 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.88 58.0 5.19e-01 73.8% 50.3%
4493478 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.87 72.0 7.61e-01 100.0% 94.6%
4071971 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.87 70.0 7.03e-01 100.0% 82.8%
3963760 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.86 76.0 7.69e-01 100.0% 92.3%
4036705 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.85 69.0 7.21e-01 100.0% 89.6%
3164339 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.85 75.0 7.36e-01 100.0% 86.4%
3970039 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.83 75.0 7.68e-01 100.0% 96.4%
4007999 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.81 68.0 7.02e-01 100.0% 92.6%
3980359 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.81 71.0 7.30e-01 100.0% 95.0%
4646593 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.80 67.0 7.01e-01 100.0% 93.3%
3290509 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.80 48.0 6.07e-01 85.5% 97.8%
4406602 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.79 68.0 6.98e-01 100.0% 93.5%
4999430 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.78 52.0 5.74e-01 94.5% 82.5%
4259069 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 56.0 4.91e-01 73.1% 62.0%
4937389 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.78 52.0 5.90e-01 100.0% 89.1%
5006274 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.77 53.0 5.39e-01 73.8% 72.1%
3974846 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.77 52.0 5.95e-01 73.8% 90.9%
3964944 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.76 68.0 6.94e-01 100.0% 97.1%
3989651 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.74 52.0 4.64e-01 71.7% 87.9%
4938445 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.73 52.0 5.38e-01 71.7% 78.5%
3266698 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.73 53.0 5.55e-01 75.2% 86.7%
4937121 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.71 50.0 5.64e-01 75.9% 91.3%
3615426 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.71 51.0 5.07e-01 73.8% 76.0%
5037939 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.67 52.0 5.11e-01 88.3% 74.8%
1323508 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.63 52.0 5.36e-01 85.5% 96.4%
3959531 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 30.0 4.03e-01 93.8% 100.0%
5020252 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.56 38.0 4.19e-01 95.2% 85.0%
None — 0.56 52.0 4.95e-01 100.0% 96.5%
3767475 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 28.0 3.39e-01 96.6% 76.7%
4941925 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 26.0 3.49e-01 96.6% 95.3%