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MF614627.1__ATE84664.1__phi2LM21_p47__00047

Bact-Vir

MF614627.1__ATE84664.1__phi2LM21_p47__00047

Identity

Accession:
MF614627 ↗
Kingdom:
phage

Quality

96.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-67
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22262.3 best DUF6950 51.1 2.10e-13 97.0% 44.8%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1musA01 1.10.246.40 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Tn5 transposase; domain 1 0.58 41.0 4.16e-01 76.1% 97.0%
2bbrA02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.55 37.0 3.28e-01 70.1% 70.0%
5k29A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.55 41.0 3.76e-01 83.6% 62.9%
1z5zA02 1.20.120.850 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SWI2/SNF2 ATPases, N-terminal domain 0.53 39.0 3.80e-01 79.1% 76.3%
2rfpA00 1.10.3420.10 Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain 0.53 39.0 2.97e-01 79.1% 92.9%
3c7mA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 42.0 3.08e-01 88.1% 60.0%
3bvxA02 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.52 36.0 3.10e-01 71.6% 82.9%
2i7aA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 43.0 3.37e-01 98.5% 61.8%
3tl4X01 1.10.8.1290 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1, domain 1 0.51 39.0 3.38e-01 86.6% 50.9%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3620215 101.1.1.35 alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq 0.68 46.0 3.34e-01 71.6% 27.4%
3656369 605.4.1.0 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.61 42.0 3.60e-01 73.1% 71.3%
4530539 2484.5.1.3 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.61 43.0 2.99e-01 76.1% 21.2%
4033044 632.19.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.59 40.0 3.93e-01 71.6% 93.3%
4227907 6094.1.1.3 a+b two layers › KS-MAT linker domain in fatty acid synthase › KS-MAT linker domain in fatty acid synthase › KS-MAT linker domain in fatty acid synthase › CurL-like_PKS_C 0.58 42.0 3.48e-01 80.6% 42.4%
3391578 101.1.1.313 alpha arrays › HTH › HTH › Three-helical HTH › PF29968 0.57 40.0 3.20e-01 71.6% 56.6%
3250554 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.57 47.0 3.22e-01 100.0% 66.3%
4034224 632.19.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.56 41.0 3.96e-01 77.6% 97.3%
D2 medium residues 68-134
PDB
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.78 56.0 4.42e-01 76.1% 69.9%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 52.0 5.35e-01 71.6% 92.3%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 52.0 5.27e-01 74.6% 83.3%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 53.0 5.67e-01 77.6% 100.0%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 52.0 5.16e-01 76.1% 81.2%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 49.0 5.02e-01 71.6% 89.2%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 48.0 5.09e-01 70.1% 91.5%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 51.0 4.34e-01 77.6% 62.0%
2evrA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.70 62.0 4.79e-01 100.0% 55.4%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.69 62.0 4.98e-01 100.0% 56.6%
1h3zA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 52.0 4.42e-01 82.1% 92.6%
2lp6A00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.67 52.0 4.69e-01 83.6% 100.0%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 50.0 5.18e-01 79.1% 98.4%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.67 57.0 4.98e-01 97.0% 83.7%
1qmyA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 54.0 4.27e-01 100.0% 54.5%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.64 55.0 4.85e-01 97.0% 86.1%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 43.0 4.51e-01 71.6% 90.0%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 44.0 4.15e-01 73.1% 83.3%
1yloE02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.63 44.0 4.12e-01 73.1% 100.0%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.63 54.0 4.64e-01 97.0% 80.7%
3pggA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 45.0 4.32e-01 76.1% 96.2%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.63 44.0 4.61e-01 74.6% 100.0%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.63 46.0 4.56e-01 80.6% 82.2%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 48.0 4.96e-01 95.5% 89.1%
2e6nA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 53.0 4.55e-01 95.5% 64.4%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.61 43.0 3.96e-01 77.6% 78.5%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 53.0 5.20e-01 98.5% 93.2%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.60 44.0 3.98e-01 79.1% 57.8%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 43.0 4.32e-01 76.1% 90.9%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 43.0 3.75e-01 76.1% 62.5%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 49.0 4.27e-01 89.6% 96.0%
1bnkA00 3.10.300.10 Alpha Beta › Roll › 3-methyladenine DNA Glycosylase; Chain A › Methylpurine-DNA glycosylase (MPG) 0.59 48.0 3.48e-01 91.0% 79.5%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 48.0 4.14e-01 89.6% 96.3%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.59 46.0 4.09e-01 88.1% 100.0%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.58 46.0 3.79e-01 91.0% 76.6%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.58 49.0 3.51e-01 100.0% 75.3%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.58 47.0 3.63e-01 100.0% 61.2%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.57 41.0 3.00e-01 76.1% 33.2%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.57 38.0 4.32e-01 70.1% 100.0%
5d3xB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 38.0 3.09e-01 70.1% 64.5%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.57 38.0 2.80e-01 70.1% 51.9%
3w1eA03 2.40.10.410 Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain 0.56 40.0 3.75e-01 77.6% 98.9%
4ifsA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.54 36.0 3.00e-01 70.1% 68.2%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 48.0 3.34e-01 100.0% 85.0%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.54 36.0 2.97e-01 70.1% 68.7%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 44.0 2.95e-01 95.5% 71.1%
2byoA00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.53 39.0 3.00e-01 83.6% 88.0%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 38.0 3.37e-01 82.1% 85.0%
1t6eX01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.51 41.0 3.04e-01 88.1% 41.4%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3888395 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.78 57.0 5.27e-01 77.6% 100.0%
3395150 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 56.0 5.91e-01 76.1% 100.0%
3910727 4.1.1.353 beta barrels › SH3 › SH3 › SH3 › SH3_TNRC18 0.77 57.0 5.86e-01 79.1% 100.0%
3996278 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 53.0 4.37e-01 74.6% 60.8%
3231177 4.1.1.333 beta barrels › SH3 › SH3 › SH3 › PF29330 0.75 52.0 5.88e-01 71.6% 100.0%
3923767 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.75 53.0 4.80e-01 74.6% 90.0%
3586487 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 54.0 5.02e-01 77.6% 64.7%
3619813 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 57.0 4.77e-01 83.6% 83.5%
3187920 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 53.0 4.19e-01 79.1% 70.7%
3781383 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 56.0 5.05e-01 83.6% 75.6%
3037102 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 49.0 5.06e-01 71.6% 83.9%
3533770 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.70 53.0 4.58e-01 80.6% 55.2%
3558188 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.70 52.0 5.08e-01 79.1% 74.7%
3852545 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 52.0 5.43e-01 79.1% 95.0%
3768116 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.70 53.0 3.66e-01 80.6% 32.6%
3893356 219.1.1.25 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT 0.70 52.0 3.84e-01 79.1% 57.6%
3389662 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.69 49.0 4.70e-01 76.1% 87.5%
4303959 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.69 60.0 4.57e-01 97.0% 90.3%
5010546 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.69 60.0 5.15e-01 100.0% 85.5%
3769507 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.67 46.0 4.56e-01 71.6% 80.0%
4264671 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 50.0 4.81e-01 85.1% 92.5%
3485667 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.65 47.0 4.54e-01 76.1% 97.3%
4280097 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 48.0 5.04e-01 80.6% 100.0%
5078006 375.1.3.1 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 0.65 44.0 4.39e-01 70.1% 67.1%
4217944 11.1.4.132 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › VasX_N 0.64 46.0 3.58e-01 76.1% 59.3%
3290662 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.64 53.0 4.45e-01 100.0% 66.9%
3226615 4.1.1.389 beta barrels › SH3 › SH3 › SH3 › PF30352 0.63 55.0 4.87e-01 95.5% 77.9%
3517377 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 57.0 5.21e-01 98.5% 78.8%
4299010 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 51.0 4.59e-01 91.0% 97.9%
3333152 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.63 46.0 4.37e-01 79.1% 83.7%
3198252 1.1.17.4 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 0.62 49.0 3.71e-01 86.6% 68.2%
4197746 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.62 51.0 4.75e-01 91.0% 94.1%
3514191 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 55.0 4.80e-01 100.0% 90.0%
3934628 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 53.0 4.87e-01 98.5% 75.6%
4527355 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 46.0 4.57e-01 83.6% 95.7%
3558926 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 52.0 4.72e-01 95.5% 74.4%
1680145 219.1.1.43 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CoV_peptidase 0.60 51.0 3.52e-01 100.0% 56.0%
3570700 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 51.0 4.32e-01 95.5% 60.0%
4533388 219.1.1.122 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF28648 0.60 50.0 3.60e-01 100.0% 88.4%
4485576 1.1.17.4 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 0.60 48.0 3.15e-01 86.6% 36.2%
3407855 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 51.0 4.65e-01 95.5% 73.3%
4937158 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 44.0 4.59e-01 79.1% 91.7%
5033892 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 42.0 4.30e-01 77.6% 100.0%
3234981 633.23.1.4 alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.59 40.0 2.87e-01 70.1% 69.0%
3524963 219.1.1.122 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF28648 0.59 49.0 3.27e-01 100.0% 80.0%
4945344 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 48.0 3.10e-01 92.5% 70.2%
3801941 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.58 42.0 3.57e-01 77.6% 51.3%
4953913 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.58 40.0 4.19e-01 74.6% 95.0%
3929729 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 39.0 2.91e-01 70.1% 75.4%
4069793 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 44.0 4.36e-01 85.1% 94.3%
4476045 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 44.0 4.39e-01 88.1% 92.9%
4261362 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 45.0 4.47e-01 92.5% 95.7%
4396355 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.56 45.0 4.26e-01 92.5% 87.1%
3925491 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.56 38.0 2.75e-01 71.6% 69.5%
4965523 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 38.0 4.03e-01 71.6% 98.2%
3540870 375.1.1.202 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Tmemb_55A 0.55 31.0 3.87e-01 79.1% 95.0%
3458699 376.1.2.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.54 36.0 2.81e-01 70.1% 41.1%
4020676 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.53 36.0 2.60e-01 70.1% 61.0%
3579987 220.1.1.160 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.51 40.0 3.45e-01 86.6% 76.4%
3192998 5.1.3.23 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.51 43.0 2.81e-01 94.0% 79.7%
3901788 10.1.1.1 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.50 42.0 3.20e-01 94.0% 69.1%
3512735 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.50 34.0 2.47e-01 70.1% 66.7%