←Back to structures
MF614627.1__ATE84679.1__phi2LM21_p62__00062
Bact-VirMF614627.1__ATE84679.1__phi2LM21_p62__00062
Identity
- Accession:
- MF614627 ↗
- Kingdom:
- phage
Quality
89.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-89
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dzuP00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.71 | 60.0 | 4.44e-01 | 92.6% | 86.1% |
| 6btdA00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.70 | 59.0 | 4.43e-01 | 92.6% | 89.7% |
| 1lfoA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.70 | 40.0 | 3.45e-01 | 71.6% | 36.2% |
| 3kxyJ00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.66 | 58.0 | 5.02e-01 | 100.0% | 87.6% |
| 4g6tA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.66 | 56.0 | 4.93e-01 | 98.8% | 85.2% |
| 1pvtA00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.65 | 58.0 | 4.18e-01 | 98.8% | 93.5% |
| 1jyoA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.65 | 57.0 | 4.91e-01 | 100.0% | 86.9% |
| 1k8kD01 | 3.30.1460.20 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.65 | 53.0 | 4.36e-01 | 91.4% | 81.5% |
| 3kf3A02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.62 | 48.0 | 3.76e-01 | 84.0% | 74.0% |
| 6ci7A01 | 3.30.160.660 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.62 | 51.0 | 4.48e-01 | 90.1% | 63.9% |
| 7emfR01 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.60 | 42.0 | 3.27e-01 | 72.8% | 39.4% |
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.60 | 50.0 | 5.11e-01 | 91.4% | 98.8% |
| 5ysnB02 | 3.40.50.11240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Ethanolamine ammonia-lyase light chain (EutC) | 0.60 | 49.0 | 3.85e-01 | 92.6% | 91.4% |
| 1p49A03 | 3.30.1120.10 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.58 | 41.0 | 3.74e-01 | 72.8% | 65.7% |
| 1t6aA02 | 3.30.310.120 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein | 0.58 | 38.0 | 3.93e-01 | 80.2% | 69.2% |
| 2fkiA00 | 3.90.1150.30 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.57 | 49.0 | 4.36e-01 | 95.1% | 76.3% |
| 7febA01 | 3.40.30.60 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 | 0.57 | 49.0 | 4.22e-01 | 96.3% | 97.7% |
| 3v0rA01 | 2.40.350.20 | Mainly Beta › Beta Barrel › AOC barrel-like › | 0.57 | 40.0 | 3.57e-01 | 75.3% | 61.7% |
| 4r8oA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.56 | 38.0 | 3.66e-01 | 71.6% | 68.4% |
| 3tg9A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.56 | 43.0 | 2.95e-01 | 85.2% | 70.2% |
| 5mj3A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 41.0 | 4.02e-01 | 79.0% | 88.5% |
| 3d2mA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 40.0 | 3.27e-01 | 76.5% | 61.3% |
| 1p6pA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 37.0 | 3.24e-01 | 71.6% | 50.4% |
| 6wqbA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 38.0 | 3.15e-01 | 77.8% | 63.5% |
| 2ra8A01 | 2.20.140.10 | Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain | 0.52 | 39.0 | 4.07e-01 | 81.5% | 86.5% |
| 8bddA02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.52 | 45.0 | 2.99e-01 | 100.0% | 83.3% |
| 1y6kR02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 36.0 | 3.39e-01 | 74.1% | 88.3% |
| 5ib0A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 36.0 | 3.12e-01 | 75.3% | 69.3% |
| 3iwgA01 | 3.40.630.80 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › | 0.50 | 36.0 | 3.16e-01 | 77.8% | 69.2% |
| 4qrlA00 | 2.40.128.280 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 38.0 | 3.51e-01 | 84.0% | 68.2% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3818015 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.69 | 55.0 | 4.15e-01 | 85.2% | 73.7% |
| 3248749 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.66 | 56.0 | 5.12e-01 | 96.3% | 82.7% |
| 1018784 | 241.1.1.3 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › CesT | 0.66 | 56.0 | 4.93e-01 | 98.8% | 85.2% |
| 3690503 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.65 | 52.0 | 4.74e-01 | 87.7% | 78.9% |
| 3492352 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.64 | 52.0 | 4.86e-01 | 92.6% | 76.2% |
| 3249797 | 2004.1.1.78 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rap_GAP | 0.63 | 55.0 | 4.22e-01 | 100.0% | 96.4% |
| 3617025 | 220.1.1.56 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH | 0.62 | 45.0 | 3.89e-01 | 75.3% | 68.8% |
| 3731495 | 330.1.1.3 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer | 0.62 | 48.0 | 4.51e-01 | 84.0% | 88.0% |
| 4058654 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.62 | 49.0 | 4.66e-01 | 88.9% | 86.9% |
| 5074996 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.62 | 49.0 | 3.78e-01 | 84.0% | 87.1% |
| 3281348 | 4221.1.1.0 ↗ | a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like | 0.62 | 50.0 | 4.71e-01 | 88.9% | 93.0% |
| 6667 | 4221.1.1.1 ↗ | a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › DUF1797 | 0.61 | 50.0 | 5.11e-01 | 87.7% | 98.7% |
| 3349878 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.60 | 49.0 | 3.69e-01 | 86.4% | 75.5% |
| 3238369 | 12.1.1.88 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF5386 | 0.60 | 38.0 | 4.47e-01 | 70.4% | 98.1% |
| 3599949 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.59 | 42.0 | 4.05e-01 | 75.3% | 66.3% |
| 3839444 | 241.9.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF5655 | 0.59 | 52.0 | 4.55e-01 | 97.5% | 75.8% |
| 4947114 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.59 | 40.0 | 3.21e-01 | 71.6% | 78.2% |
| 3941694 | 241.11.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR | 0.57 | 49.0 | 4.45e-01 | 96.3% | 80.9% |
| 3509392 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.56 | 45.0 | 3.66e-01 | 88.9% | 67.5% |
| 3676329 | 5.1.4.15 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RPE65 | 0.56 | 42.0 | 2.89e-01 | 80.2% | 30.0% |
| 3535499 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 38.0 | 3.39e-01 | 75.3% | 51.8% |
| 3884904 | 7515.1.1.2 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase | 0.55 | 44.0 | 2.94e-01 | 85.2% | 43.9% |
| 3187813 | 220.1.1.204 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_24 | 0.55 | 39.0 | 3.47e-01 | 75.3% | 52.2% |
| 3386462 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.55 | 33.0 | 3.07e-01 | 75.3% | 45.7% |
| 5059423 | 244.2.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain | 0.55 | 38.0 | 3.70e-01 | 72.8% | 82.2% |
| 3177726 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.54 | 39.0 | 2.97e-01 | 75.3% | 33.5% |
| 3607882 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 42.0 | 3.77e-01 | 100.0% | 60.9% |
| 3908017 | 4.1.1.253 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4537 | 0.54 | 37.0 | 3.74e-01 | 70.4% | 78.8% |
| 5000522 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.54 | 40.0 | 3.08e-01 | 84.0% | 69.8% |
| 3920678 | 5.1.5.41 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_2 | 0.54 | 41.0 | 2.75e-01 | 85.2% | 47.7% |
| 3583988 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.53 | 41.0 | 3.72e-01 | 84.0% | 89.1% |
| 3395485 | 5.1.4.155 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MIOS_WD40 | 0.53 | 42.0 | 2.76e-01 | 87.7% | 85.6% |
| 3734170 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.52 | 39.0 | 2.88e-01 | 79.0% | 60.7% |
| 3629315 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 38.0 | 2.94e-01 | 76.5% | 61.1% |
| 3478519 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.52 | 38.0 | 3.11e-01 | 75.3% | 63.6% |
| 3206092 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.52 | 41.0 | 2.51e-01 | 84.0% | 78.1% |
| 4259150 | 295.1.1.46 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › WapI | 0.52 | 38.0 | 3.28e-01 | 79.0% | 60.0% |
| 3872129 | 73.1.1.1 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA | 0.51 | 44.0 | 3.79e-01 | 95.1% | 62.3% |
| 3832257 | 844.1.1.1 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Tub | 0.51 | 41.0 | 2.97e-01 | 92.6% | 60.6% |
| 3504035 | 633.33.1.1 ↗ | alpha bundles › Bromodomain-like › Rogdi › Rogdi › Rogdi_lz | 0.50 | 42.0 | 2.99e-01 | 92.6% | 60.0% |
| 2327295 | 6041.1.1.0 ↗ | a+b two layers › DUF1107-like › DUF1107-like › DUF1107-like | 0.50 | 38.0 | 3.55e-01 | 80.2% | 87.1% |