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MF614628.1__ATE84719.1__phi3LM21_p33__00033

Bact-Vir

MF614628.1__ATE84719.1__phi3LM21_p33__00033

Identity

Accession:
MF614628 ↗
Kingdom:
phage

Quality

82.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-178
PDB
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jcqA00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.87 57.0 5.48e-01 78.9% 59.4%
3bf0C03 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.87 62.0 6.02e-01 78.9% 66.5%
5o34C00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.82 53.0 4.79e-01 71.1% 50.5%
5e0sB00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.80 62.0 5.52e-01 89.5% 59.7%
1y7oB00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.80 60.0 5.62e-01 86.8% 65.2%
5vipB01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.71 62.0 5.35e-01 91.4% 64.9%
4l6wA02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.68 62.0 5.51e-01 96.7% 71.5%
4jz5A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.63 48.0 4.30e-01 78.9% 77.2%
5z1aA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.62 48.0 3.79e-01 81.6% 49.4%
2vtfA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.61 50.0 3.80e-01 86.8% 67.5%
4r33A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 52.0 3.92e-01 94.7% 70.1%
2j48A00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 37.0 4.13e-01 93.4% 79.0%
3g8qA01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.59 38.0 4.28e-01 78.9% 85.8%
3l0gA02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.59 39.0 3.93e-01 76.3% 66.0%
2a5hA02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 53.0 4.27e-01 98.0% 65.7%
3hdvB00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 37.0 3.99e-01 92.1% 75.4%
1c4kA01 3.40.50.220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 31.0 3.64e-01 85.5% 73.3%
1r30A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 49.0 3.91e-01 91.4% 78.8%
4wxmB00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 37.0 3.93e-01 91.4% 73.6%
5nusA00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.57 51.0 4.63e-01 98.7% 87.7%
4p32B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 43.0 3.70e-01 77.6% 81.3%
5dmmA00 3.20.20.330 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Homocysteine-binding-like domain 0.56 47.0 3.85e-01 92.1% 87.5%
2yz2B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 41.0 3.42e-01 76.3% 68.8%
7wbtA02 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.55 46.0 3.36e-01 90.8% 59.1%
3bjsA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.55 42.0 3.55e-01 79.6% 63.6%
1mumA00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.55 47.0 3.81e-01 91.4% 56.1%
7r8bB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 42.0 3.41e-01 78.9% 71.2%
3f6tA03 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.55 40.0 3.57e-01 78.9% 52.3%
4cn8A02 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.55 47.0 4.43e-01 95.4% 79.6%
7osfB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 40.0 3.58e-01 75.7% 74.1%
3slkA01 3.40.50.11460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 45.0 4.34e-01 88.8% 81.4%
8ipqB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 39.0 3.60e-01 73.0% 84.2%
3n2xA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 46.0 3.69e-01 91.4% 52.0%
6ovqA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.54 44.0 3.58e-01 88.8% 55.3%
3gm8A03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 44.0 3.47e-01 86.8% 45.9%
3c6cA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 45.0 3.67e-01 90.8% 76.2%
1z6tA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 40.0 3.79e-01 77.0% 87.0%
4f1jA00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.53 47.0 4.34e-01 98.7% 82.0%
1wd5A01 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 39.0 4.00e-01 82.9% 80.1%
5c54G00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 44.0 3.55e-01 91.4% 51.1%
4ru1A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 39.0 3.99e-01 91.4% 80.4%
1zlpA00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.52 44.0 3.69e-01 94.1% 60.6%
4ml9A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 45.0 3.77e-01 96.7% 67.4%
7wmzC01 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.52 43.0 3.55e-01 89.5% 73.1%
1vj0A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 40.0 4.13e-01 82.9% 100.0%
2zosB01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.51 42.0 4.22e-01 95.4% 84.9%
1i5eA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 42.0 3.77e-01 86.2% 83.7%
2bdqA00 3.20.20.380 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Copper homeostasis (CutC) domain 0.51 45.0 4.05e-01 96.1% 86.6%
6gs8A01 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.51 42.0 3.42e-01 88.8% 53.0%
1nvmA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 43.0 3.60e-01 91.4% 53.3%
1jqlB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 37.0 3.88e-01 95.4% 82.9%
5kiaA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 36.0 3.84e-01 92.1% 85.1%
1reqA02 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.50 38.0 3.77e-01 79.6% 89.6%
2e7jA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.50 41.0 3.62e-01 88.8% 72.8%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3979334 2486.1.1.5 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 0.93 68.0 5.60e-01 73.7% 48.8%
5012787 2486.1.1.5 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 0.89 59.0 4.81e-01 87.5% 40.8%
4992730 2486.1.1.5 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 0.89 59.0 5.35e-01 78.3% 52.8%
4932322 2486.1.1.5 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 0.88 62.0 4.96e-01 73.0% 40.8%
3385872 2486.1.1.14 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease, Peptidase_S49 0.88 58.0 4.59e-01 75.0% 37.0%
4876908 2486.1.1.2 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease 0.88 59.0 5.51e-01 79.6% 57.5%
4812887 2486.1.1.2 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease 0.87 58.0 5.19e-01 79.6% 51.0%
1174289 2486.1.1.14 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease, Peptidase_S49 0.87 62.0 5.22e-01 75.7% 47.6%
4127180 2486.1.1.2 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease 0.87 59.0 5.31e-01 81.6% 53.3%
4522150 2486.1.1.5 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 0.86 61.0 4.79e-01 73.0% 42.7%
3968901 2486.1.1.14 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease, Peptidase_S49 0.86 61.0 4.65e-01 74.3% 36.1%
4149588 2486.1.1.2 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease 0.85 59.0 5.14e-01 81.6% 50.5%
5016091 2486.1.1.5 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 0.85 62.0 5.09e-01 73.7% 45.7%
3449037 2486.1.1.2 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease 0.85 59.0 5.01e-01 83.6% 46.4%
3978000 2486.1.1.2 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease 0.84 57.0 5.07e-01 90.8% 50.0%
4129382 2486.1.1.2 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease 0.84 61.0 5.61e-01 88.2% 60.0%
4489618 2486.1.1.2 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease 0.83 60.0 5.54e-01 86.2% 59.5%
3977155 2486.1.1.19 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease, SDH_protease 0.82 56.0 4.90e-01 88.2% 49.3%
4335500 2486.1.1.2 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease 0.81 63.0 5.35e-01 86.2% 53.0%
5042373 2486.1.1.5 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 0.81 58.0 4.83e-01 76.3% 45.7%
4469638 2486.1.1.2 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease 0.80 58.0 5.29e-01 86.2% 57.9%
4955509 2486.1.1.0 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase 0.79 58.0 4.75e-01 82.2% 44.2%
3950506 2486.1.1.14 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease, Peptidase_S49 0.77 69.0 4.56e-01 92.1% 72.5%
3448952 2486.1.1.2 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease 0.77 60.0 5.30e-01 86.8% 58.5%
3273502 2486.1.1.5 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 0.77 69.0 4.51e-01 92.8% 65.2%
3953161 2486.1.1.5 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 0.77 70.0 4.63e-01 94.1% 72.5%
4007097 2486.1.1.5 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 0.77 69.0 4.45e-01 94.1% 59.1%
4123638 2486.1.1.2 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease 0.77 62.0 5.43e-01 92.1% 60.0%
3604398 2486.1.1.19 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease, SDH_protease 0.76 63.0 5.18e-01 86.2% 51.0%
3965266 2486.1.1.5 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 0.76 59.0 4.67e-01 83.6% 42.5%
4089356 2486.1.1.22 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › SDH_protease, NfeD1b_N 0.76 61.0 5.10e-01 82.9% 52.1%
4356494 2486.1.1.14 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease, Peptidase_S49 0.76 61.0 4.88e-01 86.2% 45.4%
4984269 2486.1.1.0 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase 0.76 63.0 5.05e-01 86.2% 48.1%
3941785 2486.1.1.14 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease, Peptidase_S49 0.76 68.0 4.39e-01 94.1% 59.3%
4259068 2486.1.1.14 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease, Peptidase_S49 0.75 68.0 4.38e-01 94.1% 61.9%
4968967 2486.1.1.0 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase 0.75 58.0 4.61e-01 84.2% 43.2%
4445600 2486.1.1.2 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease 0.75 60.0 5.20e-01 82.2% 58.1%
3449223 2486.1.1.5 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S49 0.73 66.0 4.34e-01 94.7% 62.7%
5071469 2486.1.1.17 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › NfeD1b_N 0.73 60.0 4.77e-01 92.8% 46.0%
360240 2002.1.1.114 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_85 0.61 50.0 3.79e-01 86.8% 67.1%
5023035 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.59 50.0 4.06e-01 92.1% 87.1%
4938804 2007.3.1.0 a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains 0.58 42.0 4.48e-01 88.8% 85.0%
4975306 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.58 49.0 4.22e-01 92.1% 83.7%
4192268 2002.1.1.122 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,BATS 0.57 49.0 3.83e-01 92.8% 74.4%
3963100 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.56 48.0 3.78e-01 92.8% 67.4%
3272829 2004.1.1.417 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.55 42.0 3.40e-01 78.3% 63.5%
5026055 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.55 49.0 3.98e-01 98.7% 66.2%
3699939 2006.1.6.13 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_3 0.55 48.0 4.43e-01 94.7% 86.7%
4082850 2486.1.1.2 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › CLP_protease 0.55 42.0 3.63e-01 81.6% 89.4%
5000171 2007.3.1.6 a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA_2 0.54 46.0 4.32e-01 89.5% 78.3%
4999753 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.54 49.0 3.80e-01 98.7% 53.0%
3220883 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.54 46.0 4.39e-01 91.4% 82.9%
4959806 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.54 47.0 3.78e-01 99.3% 94.8%
4989504 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.53 45.0 3.49e-01 92.8% 97.5%
4175296 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 45.0 3.98e-01 91.4% 76.4%
3913962 2006.1.6.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.53 46.0 4.23e-01 94.7% 78.5%
3936749 2006.1.6.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.53 46.0 4.09e-01 96.1% 69.1%