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MF621978.1__ATI16316.1__Lull_009__00009

Bact-Vir

MF621978.1__ATI16316.1__Lull_009__00009

Identity

Accession:
MF621978 ↗
Kingdom:
phage

Quality

66.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autonotataviridae› Lullwatervirus› Caulobacter_phage_Lullwater

TaxID: 2024607

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 43-112
PDB
Domain cluster: rep: MK962638.1__QDH84563.1__Axy21_014__00014__D153-208
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 61.0 5.86e-01 90.0% 70.0%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 59.0 6.24e-01 88.6% 87.1%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 57.0 6.05e-01 87.1% 83.9%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 57.0 5.04e-01 90.0% 53.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 56.0 6.17e-01 90.0% 91.2%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.78 63.0 6.62e-01 91.4% 95.2%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 63.0 6.25e-01 91.4% 83.3%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 61.0 6.07e-01 84.3% 84.7%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 63.0 6.15e-01 95.7% 81.6%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 61.0 5.52e-01 90.0% 65.2%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 52.0 5.38e-01 87.1% 80.0%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 60.0 5.10e-01 90.0% 57.4%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 56.0 5.08e-01 84.3% 63.0%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.71 62.0 4.82e-01 95.7% 61.6%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 46.0 4.56e-01 70.0% 63.5%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 49.0 5.19e-01 84.3% 84.1%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 47.0 4.79e-01 81.4% 72.9%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 49.0 5.13e-01 84.3% 84.1%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.68 59.0 5.29e-01 94.3% 84.2%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 48.0 5.06e-01 84.3% 85.5%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.67 53.0 4.77e-01 88.6% 62.1%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 53.0 5.19e-01 90.0% 80.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 4.68e-01 90.0% 67.5%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.66 44.0 4.84e-01 77.1% 87.5%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 47.0 4.83e-01 84.3% 80.3%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.64 48.0 4.24e-01 80.0% 100.0%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 58.0 4.64e-01 100.0% 54.1%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.63 44.0 4.77e-01 75.7% 91.1%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.63 42.0 4.67e-01 77.1% 87.5%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.63 42.0 4.59e-01 75.7% 92.3%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.62 42.0 4.36e-01 75.7% 78.1%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 3.99e-01 87.1% 93.1%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 49.0 5.04e-01 90.0% 98.5%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.61 41.0 4.52e-01 75.7% 94.1%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.61 43.0 4.26e-01 75.7% 73.0%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.59 41.0 4.45e-01 74.3% 89.8%
2krtA01 3.10.450.270 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 39.0 3.41e-01 70.0% 92.2%
7z0sE01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.57 43.0 3.69e-01 82.9% 85.7%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 42.0 3.07e-01 88.6% 28.1%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.56 35.0 4.00e-01 74.3% 93.8%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 44.0 4.55e-01 94.3% 95.5%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 47.0 3.70e-01 100.0% 70.5%
2k50A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 41.0 3.69e-01 84.3% 91.3%
5dstA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.54 38.0 2.93e-01 75.7% 97.2%
1q47A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 47.0 2.88e-01 100.0% 32.6%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 37.0 3.85e-01 77.1% 82.0%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.53 39.0 3.73e-01 78.6% 90.5%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.52 31.0 3.37e-01 75.7% 68.3%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.52 41.0 3.13e-01 87.1% 64.1%
4j6fA01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.51 40.0 2.98e-01 88.6% 81.3%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.51 36.0 2.87e-01 78.6% 34.3%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 40.0 3.57e-01 92.9% 82.7%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4093836 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 60.0 6.49e-01 88.6% 86.7%
3394215 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.81 62.0 5.38e-01 90.0% 56.0%
3824699 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.80 62.0 6.41e-01 90.0% 87.7%
3328489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 56.0 5.63e-01 90.0% 72.9%
5051313 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 60.0 6.29e-01 91.4% 87.7%
3302166 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.78 60.0 6.27e-01 90.0% 87.7%
3901117 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.78 63.0 4.62e-01 92.9% 33.9%
3730229 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.78 57.0 5.59e-01 90.0% 72.0%
3347795 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.77 64.0 6.07e-01 91.4% 76.2%
3645842 4.1.1.162 ↗ beta barrels › SH3 › SH3 › SH3 › DUF502 0.77 64.0 6.08e-01 91.4% 77.5%
3416672 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 62.0 5.46e-01 90.0% 61.0%
3553413 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.75 59.0 5.54e-01 90.0% 69.4%
3768116 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.75 59.0 4.12e-01 90.0% 27.4%
3730835 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.74 56.0 5.08e-01 88.6% 60.0%
4674170 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.74 60.0 4.96e-01 87.1% 55.8%
3913782 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 59.0 6.12e-01 92.9% 93.8%
3441143 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.73 64.0 5.62e-01 97.1% 66.0%
3938484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 57.0 4.70e-01 84.3% 48.3%
3410370 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 58.0 5.89e-01 94.3% 87.1%
3784405 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.72 60.0 4.85e-01 88.6% 75.2%
3550699 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.72 59.0 5.34e-01 88.6% 65.3%
3582834 4.1.1.319 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.72 61.0 5.50e-01 92.9% 68.4%
3473981 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.72 60.0 4.89e-01 90.0% 85.6%
648 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.72 56.0 5.16e-01 84.3% 65.9%
3584555 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 61.0 6.19e-01 92.9% 92.9%
3511007 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.71 58.0 4.86e-01 90.0% 51.7%
3391025 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.71 48.0 5.27e-01 71.4% 87.3%
3608236 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 51.0 5.35e-01 84.3% 81.5%
3939982 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 55.0 4.70e-01 84.3% 52.7%
4063634 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.70 60.0 4.98e-01 94.3% 77.4%
163064 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.70 46.0 4.56e-01 70.0% 63.5%
3627688 4.1.1.319 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.70 62.0 4.82e-01 97.1% 46.7%
3925069 4.1.1.319 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Hsr9 0.70 62.0 4.89e-01 98.6% 48.6%
5029166 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 58.0 5.73e-01 88.6% 90.5%
4240722 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.70 55.0 4.87e-01 88.6% 59.0%
146636 4.1.3.1 ↗ beta barrels › SH3 › SH3 › Calcium-binding protein CcbP › Calci_bind_CcbP 0.70 58.0 4.77e-01 92.9% 50.8%
4051625 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.70 51.0 5.30e-01 85.7% 83.1%
3589630 243.4.1.4 ↗ a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like › DUF1292 0.69 51.0 4.71e-01 78.6% 70.0%
3306779 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 50.0 5.19e-01 84.3% 81.5%
165654 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.69 59.0 5.86e-01 95.7% 89.2%
4018672 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.67 56.0 4.70e-01 90.0% 64.3%
3728855 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 52.0 5.09e-01 88.6% 77.3%
4037383 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 48.0 4.96e-01 84.3% 81.5%
3894324 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.66 48.0 5.04e-01 81.4% 83.1%
3333339 4.8.1.34 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_SEND1 0.66 44.0 4.62e-01 70.0% 75.4%
3834563 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 54.0 5.22e-01 90.0% 78.8%
5061113 375.1.1.299 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.66 45.0 4.99e-01 78.6% 90.9%
3059317 4.1.1.116 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_14 0.66 50.0 4.31e-01 82.9% 93.8%
3572649 4.1.1.230 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7030 0.65 50.0 4.83e-01 82.9% 95.0%
3496126 4.25.1.0 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.65 52.0 4.87e-01 88.6% 86.4%
3214234 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 50.0 5.31e-01 90.0% 98.3%
4968081 375.1.1.299 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.64 43.0 4.77e-01 75.7% 89.1%
3201714 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 45.0 5.04e-01 82.9% 96.4%
3425666 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.63 41.0 3.28e-01 74.3% 34.1%
3576152 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.63 44.0 2.82e-01 75.7% 16.2%
4955341 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 51.0 4.40e-01 88.6% 93.3%
4038269 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.61 43.0 4.47e-01 85.7% 83.1%
3770803 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.59 52.0 4.52e-01 100.0% 77.3%
3948467 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.59 45.0 4.63e-01 82.9% 87.7%
3387410 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 43.0 3.65e-01 80.0% 47.0%
4228218 330.6.1.1 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.58 40.0 3.25e-01 70.0% 73.7%
3698791 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.58 42.0 4.25e-01 77.1% 80.0%
3739683 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.58 45.0 4.05e-01 91.4% 75.5%
5052285 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 44.0 3.97e-01 88.6% 74.3%
3792117 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 45.0 4.64e-01 90.0% 90.9%
5062756 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 38.0 4.28e-01 75.7% 100.0%
167841 4.26.1.1 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 0.56 41.0 4.37e-01 87.1% 95.0%
3592422 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.55 40.0 2.59e-01 78.6% 70.3%
4025174 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.55 40.0 2.91e-01 77.1% 47.2%
3927894 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.52 42.0 3.42e-01 88.6% 63.7%
4618633 4.26.1.1 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 0.52 37.0 3.93e-01 81.4% 94.9%
4961746 304.8.1.122 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DmsR_N 0.50 42.0 3.62e-01 94.3% 82.6%
3712993 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 37.0 3.67e-01 81.4% 88.0%
3978190 375.1.1.311 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF1062 0.50 39.0 3.64e-01 87.1% 92.2%