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MF629150.1__ATU47035.1__X__00001

Bact-Vir

MF629150.1__ATU47035.1__X__00001

Identity

Accession:
MF629150 ↗
Kingdom:
phage

Quality

90.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-46
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.87 59.0 5.92e-01 71.7% 70.2%
4a18Q01 1.10.10.1760 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L36 0.81 67.0 5.87e-01 93.5% 65.2%
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.77 52.0 4.26e-01 71.7% 51.2%
3dteA02 1.10.10.1030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain 0.70 55.0 5.70e-01 93.5% 100.0%
3ne5B04 6.10.140.730 Special › Helix non-globular › Helix Hairpins › 0.67 59.0 5.73e-01 100.0% 94.1%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 49.0 4.96e-01 100.0% 87.2%
7ep1B01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.65 55.0 3.47e-01 95.7% 38.4%
2zcuA02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.65 56.0 4.22e-01 100.0% 68.7%
3g0oA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.64 55.0 4.09e-01 97.8% 86.0%
3rmqA02 6.10.140.1650 Special › Helix non-globular › Helix Hairpins › 0.64 46.0 4.35e-01 78.3% 91.1%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 46.0 4.61e-01 100.0% 81.2%
2rc4A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 50.0 4.58e-01 100.0% 82.8%
2e19A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 46.0 4.62e-01 100.0% 95.7%
3l9tA01 1.10.1240.70 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.55 43.0 3.74e-01 95.7% 56.6%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3399433 3826.1.1.39 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › WHEP-TRS 0.81 56.0 4.81e-01 71.7% 47.1%
3936170 4964.1.1.0 alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I 0.80 66.0 4.65e-01 93.5% 29.7%
2121846 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.78 60.0 6.31e-01 89.1% 100.0%
3487631 198.2.1.0 alpha arrays › Saposin-like › Bacteriocin AS-48-related › Bacteriocin AS-48-related 0.78 64.0 6.54e-01 95.7% 95.6%
5028731 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.76 62.0 5.77e-01 100.0% 71.7%
5027591 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.75 64.0 6.13e-01 100.0% 81.8%
3996384 3455.1.1.7 alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors › COMM_HN 0.74 60.0 5.84e-01 100.0% 85.5%
4995679 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.74 62.0 6.12e-01 100.0% 90.0%
5030241 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.73 62.0 5.74e-01 100.0% 75.0%
4554328 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.72 62.0 5.08e-01 100.0% 84.1%
5058272 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.70 55.0 5.54e-01 93.5% 93.3%
5043409 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.69 52.0 5.31e-01 91.3% 91.1%
4392311 101.35.1.1 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.68 53.0 5.37e-01 93.5% 93.3%
3882191 101.1.2.639 alpha arrays › HTH › HTH › winged helix domain › PF28388 0.68 57.0 5.82e-01 97.8% 100.0%
3243456 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 50.0 4.89e-01 100.0% 74.5%
5035909 7573.1.1.1 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.67 54.0 3.65e-01 95.7% 51.1%
3237714 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 47.0 4.81e-01 93.5% 100.0%
3713438 108.1.1.27 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6 0.54 45.0 4.04e-01 97.8% 67.1%
3216889 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.54 42.0 4.27e-01 91.3% 84.4%
D2 high residues 55-124
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23802.2 best DUF7178 27.3 4.50e-06 100.0% 38.3%
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qo0D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 48.0 5.83e-01 88.6% 97.8%
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 55.0 6.04e-01 85.7% 94.8%
6wshA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 51.0 5.67e-01 81.4% 94.5%
1rrsA01 1.10.1670.10 Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 0.70 53.0 4.54e-01 81.4% 52.3%
1pu6A01 1.10.1670.10 Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 0.68 51.0 4.68e-01 81.4% 72.3%
1u9pA00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.66 58.0 5.20e-01 95.7% 90.6%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.64 43.0 4.64e-01 87.1% 82.8%
1tuoA03 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.62 48.0 4.09e-01 84.3% 100.0%
2lrmA00 1.10.890.30 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein 0.59 48.0 4.52e-01 88.6% 88.1%
1ailA00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.59 42.0 4.22e-01 77.1% 74.3%
3d2yA02 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.58 45.0 4.35e-01 90.0% 86.9%
2z0fA03 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.58 49.0 4.12e-01 95.7% 100.0%
1o8uC00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.57 47.0 3.37e-01 98.6% 86.2%
3hx3A01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.57 43.0 4.44e-01 97.1% 85.1%
1q5nA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.56 42.0 4.05e-01 84.3% 69.1%
2mqaA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.55 41.0 3.47e-01 81.4% 90.4%
1c8iA01 1.10.520.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › 0.55 49.0 3.57e-01 100.0% 39.4%
2pusA05 1.10.1740.80 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.54 37.0 3.56e-01 82.9% 62.5%
7wz5A01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.54 44.0 3.53e-01 94.3% 88.1%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.53 49.0 3.85e-01 100.0% 93.0%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.53 40.0 3.66e-01 82.9% 94.8%
2ze7A02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.53 39.0 3.48e-01 78.6% 65.7%
3dxiA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 36.0 2.39e-01 71.4% 42.1%
3e3rA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 43.0 3.92e-01 95.7% 100.0%
3lcvB01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.52 36.0 3.82e-01 80.0% 89.5%
4p32B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 41.0 2.92e-01 90.0% 31.3%
2yhsA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.51 44.0 3.96e-01 97.1% 70.1%
3c3dA02 1.10.8.240 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › CofD-like domain 0.50 42.0 3.96e-01 95.7% 89.8%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5042848 102.1.2.5 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Ogg-HhH 0.85 79.0 5.42e-01 100.0% 34.9%
5032585 102.1.2.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD 0.79 71.0 4.90e-01 100.0% 35.7%
3967099 102.1.2.3 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Adenine_glyco 0.79 71.0 5.09e-01 100.0% 36.4%
3391839 102.1.2.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase 0.78 70.0 4.95e-01 100.0% 37.6%
5062751 102.1.2.5 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Ogg-HhH 0.77 69.0 4.81e-01 100.0% 34.5%
4938192 102.1.2.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase 0.77 69.0 5.18e-01 100.0% 44.1%
3735495 102.1.2.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase 0.77 68.0 4.73e-01 100.0% 31.4%
4989376 102.1.2.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase 0.73 64.0 5.12e-01 98.6% 49.3%
3776363 873.1.1.5 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.68 48.0 3.35e-01 74.3% 38.1%
3961543 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.67 59.0 4.18e-01 100.0% 89.1%
3995509 3730.1.1.0 alpha arrays › CCM3/GCKIII dimerization domain › CCM3/GCKIII dimerization domain › CCM3/GCKIII dimerization domain 0.65 48.0 5.13e-01 81.4% 85.7%
3645906 2004.1.1.508 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C, UvrD_C_2 0.63 55.0 3.44e-01 97.1% 20.0%
3707908 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.62 48.0 4.20e-01 85.7% 86.4%
5067322 2484.1.1.21 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG 0.60 41.0 3.16e-01 70.0% 90.6%
4104279 2004.1.1.71 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IPPT 0.60 46.0 3.13e-01 82.9% 38.6%
3402082 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 48.0 4.24e-01 85.7% 65.0%
5016973 181.1.1.0 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.59 42.0 4.02e-01 78.6% 63.5%
3654282 108.1.1.20 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_like 0.58 49.0 4.62e-01 92.9% 82.4%
4594328 181.1.1.2 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › FlhF_N 0.58 40.0 3.99e-01 81.4% 68.0%
4953325 164.1.1.1 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 0.57 39.0 3.54e-01 70.0% 62.1%
4520782 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.56 46.0 4.22e-01 95.7% 68.4%
3399447 110.1.1.0 alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.55 42.0 4.19e-01 82.9% 92.0%
None 0.55 48.0 3.16e-01 100.0% 37.2%
5032273 2005.1.1.4 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.55 39.0 2.67e-01 75.7% 24.3%
3922053 2003.1.2.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.55 47.0 3.15e-01 100.0% 34.0%
4032310 159.1.2.6 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.55 48.0 3.80e-01 100.0% 59.3%
4586406 136.1.1.2 alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases › peroxidase,Peroxidase_ext 0.53 46.0 2.97e-01 100.0% 22.1%
4485359 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.53 39.0 3.62e-01 82.9% 61.1%
4326470 2007.1.4.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › PFK 0.52 42.0 3.04e-01 98.6% 39.6%
5073064 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.51 39.0 4.01e-01 82.9% 89.2%
5004872 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.51 44.0 3.07e-01 95.7% 69.6%
3937183 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.50 43.0 3.42e-01 97.1% 81.4%