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MF663786.1__ATI15670.1__X__00052

Bact-Vir

MF663786.1__ATI15670.1__X__00052

Identity

Accession:
MF663786 ↗
Kingdom:
phage

Quality

69.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Phabquatrovirus› Bordetella_phage_vB_BbrM_PHB04

TaxID: 2029657

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-96
PDB
D2 medium residues 105-158
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sqhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.75 40.0 2.77e-01 81.5% 17.5%
2q7eA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.62 45.0 3.01e-01 77.8% 84.9%
4zrlA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.62 45.0 3.56e-01 79.6% 94.9%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.60 43.0 3.23e-01 77.8% 67.1%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 43.0 2.91e-01 77.8% 65.4%
4oycB00 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.59 43.0 3.66e-01 77.8% 92.1%
7l1rG01 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.59 44.0 2.98e-01 81.5% 66.4%
8hbfB01 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.59 41.0 2.91e-01 74.1% 56.9%
3guxA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.59 40.0 2.63e-01 72.2% 62.3%
8dbsG01 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.58 43.0 2.89e-01 81.5% 71.6%
4at7A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.58 44.0 3.16e-01 81.5% 70.4%
4ndhB00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.58 39.0 2.81e-01 72.2% 56.7%
3ke2B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 38.0 3.19e-01 81.5% 39.6%
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.57 40.0 2.91e-01 81.5% 29.1%
2khdA00 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 40.0 3.26e-01 77.8% 94.4%
3tebB00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.56 43.0 2.81e-01 85.2% 94.7%
3ekiA01 3.40.190.180 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Cypl, domain I 0.54 39.0 2.73e-01 75.9% 31.8%
2p92A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.54 41.0 3.46e-01 85.2% 78.9%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.53 38.0 2.81e-01 75.9% 66.9%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.53 43.0 2.90e-01 100.0% 77.7%
4pxdA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 43.0 3.38e-01 90.7% 76.5%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 40.0 2.91e-01 81.5% 34.5%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.51e-01 81.5% 92.1%
3viqA00 6.10.140.1020 Special › Helix non-globular › Helix Hairpins › 0.52 40.0 3.04e-01 83.3% 57.4%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 43.0 2.94e-01 100.0% 85.3%
1k8kA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.51 37.0 3.13e-01 77.8% 81.5%
3fmbA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 41.0 3.37e-01 88.9% 83.0%
1fs0G01 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.51 39.0 3.01e-01 85.2% 83.8%
6lgqC01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.51 38.0 2.96e-01 83.3% 93.1%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.51 35.0 2.97e-01 74.1% 79.8%
2olsA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 43.0 3.24e-01 100.0% 80.4%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3943661 304.5.1.13 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF3574 0.66 37.0 3.01e-01 83.3% 26.0%
3734775 192.29.1.174 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PF28510 0.64 48.0 3.31e-01 81.5% 77.1%
1766108 223.3.1.3 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.63 43.0 4.01e-01 72.2% 100.0%
3622439 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.63 46.0 2.90e-01 79.6% 81.7%
3233546 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 38.0 2.63e-01 90.7% 19.4%
4198 4970.1.1.3 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B_2 0.61 33.0 3.16e-01 79.6% 44.6%
3218243 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.60 48.0 4.19e-01 94.4% 57.6%
4233442 304.4.1.54 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Amnionless 0.59 49.0 3.73e-01 88.9% 80.8%
4824795 239.4.1.2 ↗ beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › GSIII_N 0.59 42.0 3.54e-01 77.8% 59.4%
5053281 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 47.0 3.82e-01 100.0% 60.0%
3303720 3336.1.1.1 ↗ alpha complex topology › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › plant-specific ROP nucleotide exchanger (PRONE) domain › PRONE 0.58 40.0 2.41e-01 72.2% 19.0%
3471446 7579.1.1.81 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Arb2 0.58 41.0 2.58e-01 75.9% 35.4%
5056444 2002.1.1.29 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS 0.58 39.0 2.39e-01 70.4% 46.4%
3409269 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.57 39.0 2.40e-01 70.4% 69.7%
57748 4970.1.1.0 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.56 33.0 3.15e-01 77.8% 46.2%
3929759 2007.1.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.56 48.0 3.28e-01 100.0% 72.9%
4968256 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 41.0 3.08e-01 81.5% 34.1%
3960213 304.156.1.5 ↗ a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain › PF31086 0.55 38.0 3.00e-01 74.1% 92.2%
3815039 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.55 38.0 2.75e-01 74.1% 98.3%
3593808 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 44.0 3.54e-01 87.0% 59.0%
4595166 5076.2.1.0 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.54 46.0 3.11e-01 100.0% 93.3%
4532777 2011.1.1.6 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.54 43.0 2.77e-01 88.9% 69.8%
3735965 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.54 38.0 2.85e-01 75.9% 35.6%
3218266 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.53 43.0 2.61e-01 88.9% 83.4%
5033074 1036.1.1.1 ↗ a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.53 43.0 3.40e-01 87.0% 85.5%
4986861 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.53 35.0 3.04e-01 70.4% 68.5%
5082551 7581.1.1.0 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like 0.53 40.0 2.97e-01 81.5% 58.5%
2429160 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.52 40.0 3.16e-01 83.3% 79.8%
2834311 223.3.1.3 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.51 39.0 3.85e-01 85.2% 75.9%
5027827 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.51 42.0 3.60e-01 88.9% 90.6%
3972650 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.51 41.0 3.30e-01 88.9% 75.5%
3697137 5050.1.1.1 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.51 41.0 2.73e-01 92.6% 41.9%
3968506 3859.1.1.0 ↗ alpha arrays › uncharacterized protein BT_1490 C-terminal domain › uncharacterized protein BT_1490 C-terminal domain › uncharacterized protein BT_1490 C-terminal domain 0.50 39.0 3.11e-01 83.3% 71.4%
D3 medium residues 165-208
PDB
Domain cluster: representative
D4 medium residues 209-259
PDB
Domain cluster: representative
D5 medium residues 260-309
PDB