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MF668280.1__ASZ74591.1__SEA_PHABBA_16__00016

Bact-Vir

MF668280.1__ASZ74591.1__SEA_PHABBA_16__00016

Identity

Accession:
MF668280 ↗
Kingdom:
phage

Quality

73.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Myrnavirus› Mycobacterium_phage_Phabba

TaxID: 2027899

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-67
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kx2A00 3.30.780.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › 0.71 52.0 4.68e-01 80.3% 93.8%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.71 43.0 3.89e-01 72.7% 45.1%
3r8eA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 47.0 3.78e-01 78.8% 38.6%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 47.0 4.13e-01 77.3% 62.0%
4p6zM01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.65 46.0 3.81e-01 81.8% 41.3%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 46.0 3.63e-01 75.8% 66.2%
3i7fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 44.0 3.56e-01 74.2% 63.3%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 47.0 3.87e-01 81.8% 64.0%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 37.0 4.23e-01 75.8% 84.4%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.63 45.0 3.73e-01 77.3% 48.4%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 47.0 3.79e-01 80.3% 63.8%
3obwA02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.62 45.0 3.76e-01 77.3% 47.5%
1wp1B01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.62 55.0 3.44e-01 100.0% 63.8%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.62 39.0 3.91e-01 75.8% 62.7%
5x6vF00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 49.0 4.07e-01 92.4% 49.2%
1okjB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 42.0 3.42e-01 72.7% 64.6%
4rlcA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.60 42.0 3.36e-01 72.7% 80.7%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 43.0 3.58e-01 84.8% 45.0%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.60 49.0 3.10e-01 87.9% 93.4%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 43.0 3.62e-01 77.3% 43.6%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.59 43.0 3.55e-01 78.8% 46.4%
3dtdD00 2.60.40.1880 Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein 0.59 45.0 3.53e-01 83.3% 58.6%
2qx2A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.59 45.0 2.90e-01 81.8% 50.0%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.59 41.0 3.36e-01 78.8% 38.7%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 48.0 3.80e-01 92.4% 61.7%
3besR01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 45.0 4.19e-01 84.8% 79.5%
2hhiA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.57 42.0 3.60e-01 89.4% 45.8%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.56 42.0 4.05e-01 81.8% 70.1%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 3.84e-01 90.9% 85.2%
5aa5E00 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.56 48.0 2.87e-01 100.0% 87.3%
3dmgA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 39.0 2.87e-01 84.8% 25.3%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.53e-01 86.4% 55.7%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 39.0 2.91e-01 72.7% 59.8%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.56 40.0 3.04e-01 75.8% 47.4%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.55 42.0 2.66e-01 81.8% 72.9%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 49.0 4.12e-01 98.5% 68.2%
6lpwA02 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.54 43.0 3.02e-01 87.9% 41.5%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 41.0 3.91e-01 87.9% 70.5%
4wxaA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.53 44.0 4.07e-01 90.9% 92.9%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 35.0 2.41e-01 71.2% 17.0%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.53 45.0 3.69e-01 97.0% 52.1%
1oo0A00 3.30.1560.10 Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi 0.53 42.0 3.31e-01 87.9% 47.2%
4mtlA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 34.0 2.49e-01 78.8% 21.6%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.51 41.0 3.35e-01 86.4% 49.2%
6j5tB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 36.0 2.98e-01 74.2% 80.8%
2bklA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.51 36.0 2.38e-01 77.3% 19.2%
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.50 36.0 3.21e-01 75.8% 67.7%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3921728 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.80 50.0 4.02e-01 100.0% 36.5%
4987228 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.78 48.0 3.49e-01 97.0% 24.9%
5074343 319.1.1.23 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 0.75 49.0 4.68e-01 75.8% 58.7%
5001282 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.75 51.0 3.86e-01 100.0% 32.4%
5005819 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.73 47.0 4.35e-01 74.2% 51.8%
4974098 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.71 47.0 4.21e-01 72.7% 50.0%
4936345 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.71 48.0 4.79e-01 77.3% 67.1%
5005241 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.71 47.0 4.30e-01 74.2% 52.3%
4934840 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.71 50.0 4.05e-01 74.2% 97.6%
5002276 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.70 46.0 4.47e-01 72.7% 60.0%
5004113 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.70 46.0 4.43e-01 72.7% 60.0%
3596544 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.68 48.0 4.13e-01 72.7% 90.5%
4931277 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.67 52.0 3.96e-01 83.3% 56.8%
5051740 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.67 44.0 3.95e-01 72.7% 47.9%
4951974 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.67 44.0 3.93e-01 72.7% 47.4%
3386077 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.66 41.0 4.77e-01 77.3% 91.1%
3684015 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.66 48.0 4.08e-01 100.0% 50.0%
5020903 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.66 43.0 3.94e-01 72.7% 50.0%
4962202 2484.1.1.49 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.66 46.0 3.68e-01 74.2% 65.2%
3177048 719.2.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like 0.66 47.0 4.16e-01 75.8% 87.4%
5046999 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 47.0 3.74e-01 87.9% 37.3%
4998444 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.65 49.0 3.93e-01 81.8% 40.7%
5047389 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 47.0 3.74e-01 87.9% 38.5%
3385864 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.65 42.0 4.45e-01 75.8% 73.3%
4944313 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 50.0 3.99e-01 93.9% 40.7%
3271779 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 56.0 4.28e-01 93.9% 77.9%
5044615 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 45.0 3.63e-01 87.9% 36.3%
5049763 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 46.0 3.65e-01 83.3% 36.4%
4034138 7520.1.1.0 ↗ a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.64 46.0 3.69e-01 81.8% 38.3%
3832602 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.64 55.0 4.70e-01 98.5% 62.7%
3784589 223.2.1.19 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.64 50.0 3.81e-01 89.4% 35.3%
5045235 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 46.0 3.73e-01 87.9% 39.2%
3620870 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 42.0 3.67e-01 71.2% 45.0%
3908488 633.23.1.35 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Clarin-2 0.63 55.0 3.72e-01 93.9% 73.6%
5075279 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 47.0 3.93e-01 86.4% 46.1%
4996855 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 46.0 3.74e-01 83.3% 41.6%
5049789 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 47.0 3.80e-01 87.9% 42.4%
5077363 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 46.0 3.73e-01 87.9% 40.8%
3882038 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.62 51.0 3.87e-01 89.4% 47.7%
5051623 223.2.1.20 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.62 45.0 3.67e-01 87.9% 40.0%
3623534 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 43.0 3.88e-01 72.7% 53.3%
4948698 2484.1.1.38 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.62 44.0 3.76e-01 77.3% 53.0%
4944923 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 46.0 3.73e-01 87.9% 40.8%
3164102 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.62 37.0 4.32e-01 77.3% 88.9%
3991750 3937.1.1.2 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.61 51.0 3.28e-01 90.9% 64.3%
3265334 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.61 43.0 3.74e-01 75.8% 64.5%
4011254 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.61 49.0 3.15e-01 86.4% 58.1%
5049862 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 55.0 4.00e-01 98.5% 77.1%
4998926 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 46.0 3.67e-01 86.4% 40.8%
3387994 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.61 38.0 3.62e-01 77.3% 52.5%
5044629 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 46.0 3.89e-01 86.4% 47.8%
5050909 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 45.0 3.65e-01 87.9% 40.8%
5072327 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 46.0 3.70e-01 86.4% 40.7%
5005019 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.60 50.0 3.18e-01 98.5% 88.3%
3474422 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.59 47.0 3.73e-01 87.9% 53.6%
3783266 223.2.1.33 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.59 48.0 3.95e-01 92.4% 48.0%
3980114 3860.1.1.158 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › ThrE 0.59 45.0 3.45e-01 81.8% 37.3%
4030981 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 40.0 3.79e-01 71.2% 77.5%
4976523 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 46.0 3.64e-01 86.4% 42.9%
4946231 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 42.0 3.38e-01 89.4% 39.2%
3795670 633.23.1.35 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Clarin-2 0.57 52.0 3.59e-01 100.0% 95.3%
4188283 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 42.0 3.99e-01 78.8% 77.5%
5005811 3414.1.1.0 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.56 35.0 3.30e-01 86.4% 51.2%
3280978 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.55 38.0 3.73e-01 71.2% 67.1%
3544366 633.23.1.35 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Clarin-2 0.54 49.0 3.38e-01 100.0% 70.0%
3935147 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.54 46.0 2.92e-01 97.0% 90.0%
3620946 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 36.0 3.87e-01 72.7% 100.0%
3612244 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 36.0 3.06e-01 83.3% 40.8%
2841932 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.51 45.0 3.59e-01 95.5% 52.4%
5073917 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 37.0 3.04e-01 80.3% 60.0%