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MF668280.1__ASZ74597.1__SEA_PHABBA_22__00022

Bact-Vir

MF668280.1__ASZ74597.1__SEA_PHABBA_22__00022

Identity

Accession:
MF668280 ↗
Kingdom:
phage

Quality

70.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Myrnavirus› Mycobacterium_phage_Phabba

TaxID: 2027899

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-59
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3sqiA01 1.10.150.540 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.72 56.0 4.70e-01 86.0% 57.6%
5xdcB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.70 54.0 4.38e-01 86.0% 70.3%
1sqgA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.63 52.0 4.08e-01 100.0% 63.1%
2vj4A01 1.10.10.2060 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 46.0 4.08e-01 86.0% 62.2%
7cc7A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 48.0 3.30e-01 93.0% 48.0%
2xq9A02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.58 48.0 3.94e-01 100.0% 94.2%
2if4A02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 46.0 3.67e-01 94.7% 72.2%
1vomA01 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.57 48.0 3.03e-01 100.0% 25.0%
3llkA01 1.20.120.1960 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › QSOX sulfhydryl oxidase domain 0.57 48.0 4.09e-01 96.5% 75.5%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 41.0 3.90e-01 84.2% 81.3%
4tqgA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 47.0 2.99e-01 94.7% 56.6%
2l1lB00 1.20.1440.250 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.55 46.0 3.68e-01 100.0% 69.3%
3q18A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 46.0 3.74e-01 100.0% 85.3%
6ofuA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 44.0 2.89e-01 94.7% 26.6%
2xzmV01 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.51 37.0 3.68e-01 82.5% 82.0%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3392217 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.75 45.0 2.66e-01 70.2% 8.0%
3198591 109.59.1.7 ↗ alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain › PPR_2 0.75 58.0 4.74e-01 84.2% 47.6%
3959683 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 49.0 3.17e-01 84.2% 16.3%
3961709 633.16.1.7 ↗ alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like › Transposase_mut 0.65 49.0 4.11e-01 84.2% 45.7%
3600574 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.65 46.0 3.36e-01 75.4% 59.4%
4530535 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.65 49.0 3.12e-01 84.2% 15.8%
4519499 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.61 52.0 4.08e-01 100.0% 66.2%
3839506 531.1.1.2 ↗ alpha arrays › Domains of FliG › C-terminal domain of FliG › C-terminal domain of FliG › FliG_C+FliG_M+FliG_N 0.61 44.0 2.79e-01 84.2% 13.8%
1758254 109.4.1.1152 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_Nup120 0.61 47.0 4.71e-01 100.0% 86.2%
3413676 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 42.0 2.84e-01 73.7% 32.3%
4214506 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.59 43.0 4.39e-01 80.7% 90.9%
3628379 109.4.1.264 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RMD1-3 0.58 45.0 3.74e-01 86.0% 50.5%
4550256 604.12.1.76 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › IspA 0.58 42.0 3.99e-01 84.2% 82.7%
3422023 2003.1.2.111 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like, Lys_Orn_oxgnase 0.57 48.0 3.44e-01 98.2% 58.9%
4946202 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 41.0 3.78e-01 80.7% 67.5%
2325850 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 39.0 4.13e-01 84.2% 84.3%
3267034 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 39.0 4.09e-01 82.5% 96.0%
3529736 3755.3.1.316 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › ATRX_C 0.52 39.0 3.12e-01 86.0% 82.3%
3657221 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 36.0 3.46e-01 77.2% 67.1%