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MF668280.1__ASZ74603.1__SEA_PHABBA_28__00028

Bact-Vir

MF668280.1__ASZ74603.1__SEA_PHABBA_28__00028

Identity

Accession:
MF668280 ↗
Kingdom:
phage

Quality

74.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Myrnavirus› Mycobacterium_phage_Phabba

TaxID: 2027899

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-89
PDB
Domain cluster: rep: MH590603.1__AXH70483.1__SEA_DAREDEVIL_96__00096__D8-70
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24203.2 best Phage_ProQ_C_like 34.6 3.90e-08 100.0% 52.7%
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 47.0 4.64e-01 100.0% 66.7%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.68 43.0 3.83e-01 93.8% 45.0%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.67 49.0 4.59e-01 100.0% 62.9%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.64 41.0 4.17e-01 100.0% 65.8%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 42.0 4.59e-01 100.0% 85.9%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.62 44.0 3.28e-01 100.0% 28.6%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 41.0 4.68e-01 100.0% 93.2%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 44.0 3.83e-01 76.2% 63.5%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 40.0 3.53e-01 100.0% 47.1%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 46.0 3.89e-01 83.7% 87.9%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 42.0 3.56e-01 77.5% 90.8%
4boeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 50.0 4.12e-01 100.0% 72.1%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.57 50.0 4.26e-01 100.0% 99.3%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.57 44.0 3.74e-01 83.7% 93.3%
2r55A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 43.0 3.26e-01 85.0% 62.0%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 39.0 3.71e-01 75.0% 88.4%
3cqnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 46.0 3.80e-01 100.0% 67.1%
2cztA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 47.0 3.86e-01 100.0% 71.0%
6ya6A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 47.0 4.41e-01 97.5% 92.9%
2ew0A00 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.54 48.0 3.72e-01 100.0% 78.9%
2f2hA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.53 39.0 2.84e-01 80.0% 97.1%
3bbjA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.53 38.0 2.73e-01 77.5% 96.3%
3rd7A00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.52 39.0 2.76e-01 81.2% 83.3%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 3.54e-01 98.8% 69.7%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.52 44.0 4.08e-01 100.0% 89.9%
1rjbA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 43.0 3.78e-01 91.3% 64.4%
3rqbA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.51 39.0 2.85e-01 86.3% 87.9%
3cp7B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 37.0 3.39e-01 76.2% 81.0%
2q2bA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 37.0 3.07e-01 76.2% 74.5%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.51 43.0 3.58e-01 100.0% 83.9%
5i4nA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 41.0 3.97e-01 92.5% 91.3%
3kulA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 41.0 3.99e-01 90.0% 92.1%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3932484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 51.0 5.63e-01 100.0% 87.5%
3368864 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.73 48.0 5.22e-01 100.0% 83.1%
3241890 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 50.0 4.61e-01 100.0% 57.0%
165654 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.68 45.0 4.71e-01 100.0% 74.3%
3633294 219.1.1.93 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.65 52.0 4.39e-01 100.0% 51.4%
4004815 4.1.1.166 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2314 0.63 43.0 3.79e-01 100.0% 46.3%
4581369 4.1.1.166 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2314 0.62 45.0 4.15e-01 100.0% 58.1%
5040907 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.62 46.0 3.20e-01 76.2% 33.9%
3807651 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.62 53.0 4.72e-01 100.0% 66.4%
3236373 1.1.5.49 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.62 45.0 3.06e-01 76.2% 31.1%
3678872 4.1.1.239 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.62 47.0 4.88e-01 100.0% 86.7%
3709279 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 44.0 4.25e-01 100.0% 66.7%
3890362 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 44.0 4.63e-01 76.2% 85.7%
3721062 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.61 48.0 4.78e-01 98.8% 81.2%
3207081 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 44.0 4.84e-01 98.8% 93.8%
3459099 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.60 48.0 4.37e-01 100.0% 64.8%
3587340 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 46.0 4.58e-01 82.5% 92.9%
2568881 5084.1.1.5 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OmpW 0.60 52.0 3.93e-01 100.0% 87.2%
4055106 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.60 50.0 3.84e-01 92.5% 89.2%
3719783 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.59e-01 100.0% 75.5%
4622062 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 42.0 3.08e-01 100.0% 26.0%
3630782 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.59 44.0 3.65e-01 100.0% 44.1%
3188712 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.59 49.0 4.63e-01 100.0% 75.0%
3197517 219.1.1.129 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF7770 0.58 45.0 4.02e-01 100.0% 58.5%
3727760 219.1.1.129 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF7770 0.58 46.0 3.89e-01 100.0% 51.9%
3624046 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 49.0 4.40e-01 100.0% 80.0%
3182025 4.1.1.475 ↗ beta barrels › SH3 › SH3 › SH3 › PF26640 0.57 43.0 3.62e-01 100.0% 47.4%
3296140 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.57 50.0 3.06e-01 100.0% 16.9%
3310575 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.57 50.0 4.55e-01 100.0% 73.3%
3836393 9.2.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Vac_ImportDeg 0.56 48.0 3.72e-01 100.0% 82.7%
4951886 3174.4.1.0 ↗ beta barrels › Ribosomal protein L14-like › Hypothetical protein NegoA.19184.a N-terminal domain › Hypothetical protein NegoA.19184.a N-terminal domain 0.56 44.0 4.28e-01 97.5% 75.6%
3303897 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.56 46.0 3.65e-01 95.0% 70.8%
4016602 4.1.1.179 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6590 0.56 51.0 4.15e-01 100.0% 76.9%
3723425 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 46.0 3.05e-01 91.3% 58.8%
5012521 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.55 43.0 3.20e-01 87.5% 97.4%
4655719 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.55 40.0 3.91e-01 100.0% 68.9%
3636066 4.1.1.179 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6590 0.55 49.0 3.93e-01 100.0% 75.6%
3728893 206.1.1.55 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL 0.55 46.0 2.97e-01 91.3% 28.9%
3471723 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 46.0 4.11e-01 96.2% 99.2%
3808601 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 45.0 4.49e-01 100.0% 85.9%
3680919 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 47.0 4.20e-01 100.0% 91.3%
4875038 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.53 45.0 3.77e-01 98.8% 76.0%
3445812 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 46.0 3.91e-01 100.0% 58.6%
3990703 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 43.0 3.49e-01 91.3% 55.2%
3867284 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 45.0 2.80e-01 100.0% 18.1%
5027789 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.53 44.0 4.10e-01 100.0% 73.0%
3469125 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.52 48.0 4.03e-01 100.0% 84.6%
3897308 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.52 44.0 3.64e-01 100.0% 67.7%
3208004 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 44.0 2.63e-01 95.0% 18.3%
3696144 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 43.0 2.45e-01 95.0% 11.7%
3796614 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 44.0 3.03e-01 97.5% 31.0%
4998648 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.51 38.0 3.67e-01 82.5% 94.7%
145377 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.51 44.0 3.65e-01 100.0% 92.1%
3724875 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.50 37.0 2.53e-01 77.5% 34.7%
4405469 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.50 36.0 3.48e-01 98.8% 65.3%
3466470 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 44.0 3.79e-01 100.0% 67.7%
3185321 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.50 38.0 3.93e-01 100.0% 88.0%
5029975 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.50 46.0 4.26e-01 100.0% 80.0%
D2 medium residues 90-153
PDB