←Back to structures

MF668286.1__ASZ75029.1__SEA_TRINA_250__00217

Bact-Vir

MF668286.1__ASZ75029.1__SEA_TRINA_250__00217

Identity

Accession:
MF668286 ↗
Kingdom:
phage

Quality

73.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Trinavirus› Rhodococcus_phage_Trina

TaxID: 2027905

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-65
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d1cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.71 48.0 3.12e-01 71.7% 44.9%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.71 50.0 4.52e-01 75.5% 86.5%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.68 47.0 3.63e-01 73.6% 62.5%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.67 45.0 3.56e-01 71.7% 40.7%
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.66 53.0 4.72e-01 94.3% 88.9%
1vx7H01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.65 54.0 4.70e-01 96.2% 85.9%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.64 53.0 4.66e-01 96.2% 88.1%
3bs1A00 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.63 42.0 3.52e-01 71.7% 49.5%
3h09B02 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.62 43.0 2.52e-01 73.6% 15.3%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.61 39.0 4.36e-01 84.9% 87.2%
3vwcA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 50.0 3.73e-01 96.2% 87.7%
4trtA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.60 43.0 3.39e-01 77.4% 63.0%
1iv8A02 3.30.1590.10 Alpha Beta › 2-Layer Sandwich › Maltooligosyl trehalose synthase, domain 2 › Maltooligosyl trehalose synthase, domain 2 0.60 50.0 3.98e-01 98.1% 50.0%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.59 48.0 3.17e-01 92.5% 93.8%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.59 48.0 3.72e-01 96.2% 47.8%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 41.0 3.83e-01 88.7% 56.5%
4gp0B02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 47.0 3.76e-01 96.2% 87.0%
1w4tA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.58 39.0 2.74e-01 81.1% 20.2%
3obaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.58 47.0 3.07e-01 94.3% 44.0%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 47.0 3.98e-01 90.6% 87.6%
7lgjA01 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.58 43.0 2.85e-01 81.1% 90.0%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 44.0 4.29e-01 83.0% 79.3%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 47.0 2.77e-01 92.5% 16.7%
1vq8E01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.57 44.0 4.09e-01 96.2% 91.1%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 38.0 4.00e-01 77.4% 74.5%
4czxA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 42.0 2.67e-01 90.6% 13.6%
4rfbA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 44.0 4.04e-01 88.7% 89.3%
4a17E01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.56 43.0 3.91e-01 94.3% 87.1%
1yqeA01 3.40.630.50 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › AF0625-like 0.56 46.0 3.19e-01 94.3% 86.6%
1dq3A02 3.30.160.90 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 48.0 4.29e-01 100.0% 93.4%
3d31A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 40.0 4.19e-01 84.9% 91.3%
4g7nA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.55 42.0 3.32e-01 84.9% 47.9%
6jyxA01 2.10.270.20 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › 0.55 40.0 3.13e-01 81.1% 65.3%
2fmlA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.54 45.0 3.28e-01 98.1% 68.9%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 44.0 3.86e-01 98.1% 77.8%
6i18A04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 43.0 3.58e-01 96.2% 84.1%
3js6A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 41.0 2.84e-01 88.7% 70.8%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.53 36.0 3.27e-01 73.6% 50.0%
3fy6A01 3.30.2210.10 Alpha Beta › 2-Layer Sandwich › Integron cassette protein fold › Integron cassette protein superfamily 0.53 44.0 3.56e-01 94.3% 56.1%
2gumB01 2.30.30.1230 Mainly Beta › Roll › SH3 type barrels. › 0.53 38.0 3.23e-01 81.1% 57.0%
3bu2A02 3.30.1940.10 Alpha Beta › 2-Layer Sandwich › Nucleic acid-binding protein fold › YtpR-like 0.53 39.0 3.57e-01 79.2% 92.8%
4at7A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 40.0 2.91e-01 83.0% 81.6%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 41.0 2.93e-01 86.8% 30.1%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.52 42.0 3.33e-01 94.3% 47.1%
1x9yA01 3.10.500.10 Alpha Beta › Roll › prostaphopain b, domain 1 › Staphopain proregion domain 0.51 40.0 2.90e-01 90.6% 49.4%
2r31A01 3.30.2180.10 Alpha Beta › 2-Layer Sandwich › ATP12-like › ATP12-like 0.51 40.0 3.83e-01 92.5% 86.4%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4210866 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.71 51.0 4.33e-01 75.5% 78.8%
4232128 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.70 50.0 4.36e-01 75.5% 85.0%
5026289 2.4.1.7 ↗ beta barrels › OB-fold › MOP-like › MOP-like › OB_MalK 0.69 47.0 3.57e-01 71.7% 96.0%
4262261 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.68 46.0 4.61e-01 71.7% 89.1%
4998173 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.68 49.0 4.37e-01 77.4% 70.7%
4276957 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.68 46.0 4.59e-01 71.7% 89.1%
3949940 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.67 48.0 4.17e-01 77.4% 84.7%
5076084 230.1.1.3 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.67 46.0 3.40e-01 73.6% 66.4%
5025855 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.67 47.0 4.33e-01 75.5% 95.7%
5015133 4100.1.1.9 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 0.66 49.0 4.70e-01 84.9% 70.0%
4961666 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.66 45.0 3.40e-01 71.7% 96.9%
4992470 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.65 45.0 4.34e-01 71.7% 85.0%
4024657 109.4.1.235 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SRP68 0.64 49.0 2.79e-01 84.9% 24.7%
4323652 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.64 53.0 4.26e-01 94.3% 57.1%
5037005 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.63 51.0 4.58e-01 96.2% 90.0%
3436173 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.63 45.0 2.79e-01 94.3% 12.8%
3403782 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 53.0 4.98e-01 94.3% 89.2%
4172504 12.3.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.63 51.0 3.21e-01 92.5% 45.5%
4969162 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.63 47.0 4.60e-01 88.7% 73.3%
144176 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.62 43.0 3.29e-01 73.6% 60.5%
4088600 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.61 49.0 4.35e-01 96.2% 88.2%
3865098 4351.1.1.1 ↗ alpha arrays › ATP12-like › ATP12-like › ATP12-like › ATP12 0.61 43.0 2.87e-01 77.4% 29.7%
3509390 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.61 41.0 3.22e-01 71.7% 64.2%
3500367 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.60 45.0 3.85e-01 83.0% 93.3%
4454944 101.1.2.468 ↗ alpha arrays › HTH › HTH › winged helix domain › McbB 0.60 49.0 4.29e-01 90.6% 92.5%
3482451 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.59 47.0 3.27e-01 90.6% 45.3%
4929896 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.59 46.0 4.17e-01 94.3% 91.3%
4949459 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.59 46.0 4.15e-01 94.3% 91.3%
3708068 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 49.0 3.18e-01 94.3% 29.8%
4558826 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.58 45.0 4.11e-01 94.3% 91.3%
2841490 5.1.5.229 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_WDR75_1st 0.58 43.0 3.32e-01 90.6% 33.3%
4980224 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.58 42.0 3.24e-01 88.7% 33.6%
3181774 12.3.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.58 46.0 2.89e-01 92.5% 43.6%
1221505 12.3.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.58 47.0 3.02e-01 94.3% 43.3%
4385221 3943.1.1.0 ↗ beta sandwiches › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains 0.57 48.0 3.84e-01 100.0% 45.2%
3702882 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 42.0 2.57e-01 90.6% 11.2%
3344355 5.1.4.227 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_At4g14310 0.57 45.0 2.66e-01 86.8% 18.6%
3411401 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.57 42.0 3.61e-01 83.0% 83.2%
3627795 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 46.0 4.02e-01 92.5% 62.4%
3195886 316.1.1.56 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 0.57 45.0 2.70e-01 86.8% 34.4%
3632181 316.1.1.56 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 0.56 45.0 3.07e-01 86.8% 67.0%
3289559 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.56 42.0 2.59e-01 79.2% 26.7%
3645253 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.56 44.0 2.81e-01 88.7% 19.3%
3580501 101.46.1.1 ↗ alpha arrays › HTH › Parafibromin N-terminal domain › Parafibromin N-terminal domain › CDC73_N 0.56 49.0 3.85e-01 98.1% 94.5%
3575425 101.46.1.0 ↗ alpha arrays › HTH › Parafibromin N-terminal domain › Parafibromin N-terminal domain 0.55 48.0 3.75e-01 98.1% 96.5%
3999193 391.1.1.7 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.55 39.0 3.59e-01 73.6% 76.5%
4030804 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.55 43.0 2.76e-01 88.7% 79.3%
1921563 101.1.2.175 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_57 0.55 44.0 3.70e-01 98.1% 76.6%
4962091 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.55 44.0 3.51e-01 94.3% 83.3%
3567079 5.1.2.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 0.54 40.0 2.79e-01 92.5% 21.5%
3233044 101.46.1.1 ↗ alpha arrays › HTH › Parafibromin N-terminal domain › Parafibromin N-terminal domain › CDC73_N 0.54 45.0 3.71e-01 98.1% 97.1%
3589829 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.54 41.0 3.38e-01 86.8% 81.9%
3409499 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.53 39.0 3.45e-01 83.0% 92.9%
5022458 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.53 42.0 3.17e-01 88.7% 36.2%
3890249 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 43.0 3.49e-01 92.5% 87.5%
5049349 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 44.0 3.24e-01 100.0% 89.7%
3912902 233.1.1.3 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_alpha 0.52 40.0 3.53e-01 88.7% 56.5%
3890410 11.2.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF4550 0.50 43.0 3.09e-01 98.1% 90.0%
6419 243.3.1.11 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Staphopain_pro 0.50 40.0 2.87e-01 90.6% 49.7%