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MF668286.1__ASZ75041.1__SEA_TRINA_263__00230

Bact-Vir

MF668286.1__ASZ75041.1__SEA_TRINA_263__00230

Identity

Accession:
MF668286 ↗
Kingdom:
phage

Quality

85.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Trinavirus› Rhodococcus_phage_Trina

TaxID: 2027905

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-67
PDB
Domain cluster: rep: OQ633420.1__WEV90040.1__X__00043__D8-70
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7lt2A01 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.66 46.0 3.08e-01 84.1% 18.8%
3vgzC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 54.0 3.38e-01 88.9% 24.1%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 47.0 3.72e-01 85.7% 37.5%
2z3zA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.65 56.0 3.36e-01 93.7% 39.8%
3fvzA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.64 56.0 3.53e-01 98.4% 89.1%
4ffuB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 41.0 3.15e-01 74.6% 86.0%
1p90A00 3.30.420.130 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain 0.58 42.0 3.39e-01 77.8% 50.4%
1x7dB01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.58 50.0 3.70e-01 98.4% 63.3%
2gk9B01 3.30.800.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta 0.57 49.0 3.58e-01 92.1% 42.0%
3exzB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 41.0 3.12e-01 76.2% 86.4%
3s24A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 42.0 3.72e-01 79.4% 66.0%
1r75A00 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 39.0 3.34e-01 73.0% 76.4%
1uaiA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 38.0 2.71e-01 71.4% 97.3%
2rckA01 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.56 43.0 3.01e-01 84.1% 64.2%
3payB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 45.0 3.53e-01 88.9% 87.9%
2a4vA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 45.0 3.50e-01 92.1% 88.5%
6sshA01 3.40.50.11210 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Rap/Ran-GAP 0.55 47.0 3.45e-01 100.0% 93.0%
3nwnA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.55 37.0 2.40e-01 71.4% 93.8%
2qgyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 39.0 3.08e-01 79.4% 70.8%
4xw3A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.53 42.0 3.13e-01 93.7% 86.8%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 43.0 3.37e-01 98.4% 72.7%
4oseB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 37.0 2.39e-01 76.2% 71.8%
1sjiA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 41.0 3.48e-01 98.4% 87.9%
6grrA03 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.41e-01 88.9% 82.1%
3vmaA03 3.30.2060.10 Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain 0.51 41.0 3.76e-01 93.7% 73.3%
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.50 39.0 3.71e-01 92.1% 92.8%
1yllC02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 37.0 3.08e-01 77.8% 94.5%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2720803 5.1.4.338 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF28639 0.68 56.0 4.25e-01 90.5% 56.5%
3738156 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.65 45.0 4.73e-01 73.0% 83.6%
3260887 5090.1.1.7 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › HAP2-GCS1 0.65 48.0 3.41e-01 81.0% 66.5%
5004589 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.64 53.0 4.41e-01 92.1% 96.4%
3986085 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.63 47.0 4.09e-01 79.4% 65.3%
3369627 5.1.4.226 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7899 0.63 53.0 3.25e-01 95.2% 29.3%
3647546 4.26.1.0 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.63 45.0 4.76e-01 74.6% 100.0%
3675696 5.1.4.288 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APEH_N 0.63 55.0 3.25e-01 96.8% 55.6%
3784090 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 53.0 3.24e-01 95.2% 29.3%
3617912 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.63 55.0 4.50e-01 100.0% 66.7%
3877803 5.1.4.463 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_NWD2_C 0.63 54.0 3.30e-01 96.8% 29.4%
3804151 5.1.4.348 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_1st 0.62 52.0 3.37e-01 96.8% 40.6%
3533131 5.1.5.114 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_NWD2_C 0.62 53.0 3.34e-01 96.8% 32.5%
4984221 5.1.8.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.61 51.0 3.92e-01 93.7% 83.4%
3300781 5.1.4.226 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7899 0.60 49.0 3.37e-01 92.1% 60.5%
3286423 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 53.0 3.28e-01 98.4% 48.1%
3916641 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.59 42.0 2.92e-01 79.4% 23.5%
3191760 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.59 51.0 3.40e-01 98.4% 72.8%
3460207 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.59 50.0 3.32e-01 96.8% 50.7%
3628285 2485.1.1.48 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › QSOX_Trx1 0.59 44.0 3.84e-01 82.5% 93.0%
3585580 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.58 47.0 4.06e-01 95.2% 95.5%
3450557 5.1.3.159 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7595 0.58 48.0 3.11e-01 93.7% 63.5%
4000097 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.58 47.0 3.95e-01 93.7% 86.1%
3702369 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.57 48.0 3.88e-01 100.0% 84.4%
3709896 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 39.0 3.56e-01 71.4% 80.0%
3497683 4.1.1.309 ↗ beta barrels › SH3 › SH3 › SH3 › MRP-S34 0.56 38.0 2.98e-01 71.4% 47.3%
3429464 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.56 43.0 3.33e-01 87.3% 74.7%
3832756 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.56 47.0 3.74e-01 98.4% 97.1%
3453561 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.56 47.0 3.26e-01 100.0% 57.1%
4023136 5.1.4.179 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Vps41 0.56 47.0 2.85e-01 100.0% 74.4%
3198778 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.55 37.0 3.92e-01 77.8% 80.0%
3684642 247.1.1.12 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_3 0.55 43.0 2.81e-01 85.7% 36.1%
5032255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 44.0 4.27e-01 90.5% 94.3%
3594572 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 46.0 3.57e-01 100.0% 42.6%
4940924 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 44.0 4.06e-01 92.1% 85.9%
4466877 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.54 45.0 3.62e-01 98.4% 97.8%
3171559 206.1.2.3 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › IPK 0.53 44.0 2.86e-01 88.9% 27.7%
3423797 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.53 43.0 3.53e-01 96.8% 97.0%
165020 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.53 39.0 3.15e-01 79.4% 77.0%
3782681 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.53 38.0 3.24e-01 77.8% 67.3%
3393084 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 41.0 3.87e-01 87.3% 72.5%
2391612 319.2.1.1 ↗ beta sandwiches › HSP20-like › Pre-mRNA-splicing factor PRP11 C-terminal domain › Pre-mRNA-splicing factor PRP11 C-terminal domain › SF3A2 0.53 38.0 3.25e-01 77.8% 72.4%
3235792 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.51 42.0 2.77e-01 96.8% 56.6%
3944037 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 41.0 3.15e-01 90.5% 61.0%
5079843 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.51 39.0 3.95e-01 90.5% 100.0%
5054107 4121.1.1.1 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.50 39.0 2.63e-01 84.1% 24.1%
4962831 274.1.1.66 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7266 0.50 39.0 3.19e-01 85.7% 59.2%
4230092 10.12.1.28 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › HutD 0.50 37.0 2.99e-01 77.8% 85.8%