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MF787246.1__ATG86368.1__LpeD_84__00061

Bact-Vir

MF787246.1__ATG86368.1__LpeD_84__00061

Identity

Accession:
MF787246 ↗
Kingdom:
phage

Quality

83.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Elpedvirus› Lactobacillus_phage_LpeD

TaxID: 2041210

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-83
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 46.0 4.34e-01 100.0% 57.3%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 43.0 3.78e-01 100.0% 44.0%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 45.0 3.34e-01 71.6% 46.3%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 44.0 3.67e-01 100.0% 40.4%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 39.0 4.33e-01 97.5% 76.6%
4ybnB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 44.0 3.29e-01 72.8% 67.8%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 53.0 4.01e-01 98.8% 98.1%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.61 45.0 3.39e-01 100.0% 32.2%
2y7bA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 52.0 4.48e-01 97.5% 77.6%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 42.0 3.48e-01 71.6% 80.4%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.60 53.0 3.92e-01 100.0% 37.9%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.59 53.0 4.07e-01 100.0% 43.8%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 40.0 3.54e-01 71.6% 89.8%
3e8lC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 50.0 4.02e-01 100.0% 97.2%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 40.0 3.35e-01 71.6% 89.1%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 43.0 3.35e-01 79.0% 48.6%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 40.0 3.26e-01 71.6% 72.1%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 40.0 3.01e-01 71.6% 78.8%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 50.0 4.44e-01 96.3% 70.1%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.57 50.0 4.60e-01 100.0% 94.5%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 49.0 4.49e-01 96.3% 80.6%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 36.0 3.85e-01 100.0% 78.8%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 48.0 4.20e-01 98.8% 79.7%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 38.0 3.33e-01 71.6% 89.7%
4rlcA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.55 47.0 4.06e-01 98.8% 97.0%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 4.08e-01 95.1% 80.0%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 4.06e-01 98.8% 77.1%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 35.0 3.80e-01 100.0% 84.8%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.53 43.0 3.76e-01 100.0% 58.1%
3q39B02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.53 37.0 3.42e-01 100.0% 55.5%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 45.0 4.13e-01 96.3% 81.8%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 3.71e-01 95.1% 95.8%
3tk9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 37.0 3.36e-01 74.1% 57.0%
2xnjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 43.0 4.00e-01 100.0% 70.2%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 3.97e-01 96.3% 74.4%
2fjlA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 44.0 3.63e-01 96.3% 85.3%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 43.0 3.44e-01 98.8% 82.0%
3pftA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 35.0 2.86e-01 71.6% 65.4%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.67e-01 100.0% 79.2%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 40.0 3.69e-01 96.3% 66.1%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4319764 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.76 48.0 4.27e-01 100.0% 47.3%
2137682 1.1.5.32 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZNR 0.72 50.0 4.61e-01 71.6% 95.1%
3377696 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.66 45.0 3.34e-01 70.4% 40.0%
4001211 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 39.0 4.01e-01 96.3% 61.5%
4405252 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.64 44.0 3.65e-01 100.0% 40.7%
3447771 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.64 44.0 3.11e-01 70.4% 42.5%
3189069 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 56.0 4.97e-01 96.3% 73.9%
5062740 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.63 44.0 3.35e-01 71.6% 74.1%
4938445 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.63 41.0 3.49e-01 100.0% 40.0%
5051898 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.63 43.0 3.57e-01 71.6% 78.4%
3598734 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.62 42.0 3.04e-01 70.4% 33.6%
5006274 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.61 41.0 3.44e-01 100.0% 39.3%
4577912 1.1.5.11 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › UbiD 0.61 42.0 3.22e-01 71.6% 84.1%
3417150 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 53.0 4.17e-01 96.3% 55.3%
3972645 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.61 46.0 3.81e-01 100.0% 47.4%
3283546 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.61 42.0 3.54e-01 72.8% 78.3%
3264278 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 50.0 4.28e-01 96.3% 56.2%
5080336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 38.0 4.18e-01 100.0% 81.2%
4947401 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.60 41.0 3.39e-01 71.6% 88.4%
4940673 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 39.0 4.32e-01 100.0% 88.3%
3598207 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 50.0 4.38e-01 92.6% 88.8%
5037849 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.60 41.0 3.56e-01 100.0% 45.6%
5047239 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 43.0 4.75e-01 100.0% 95.3%
3900116 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 53.0 4.71e-01 98.8% 72.2%
3489980 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 52.0 4.49e-01 96.3% 69.6%
4958339 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.60 40.0 3.65e-01 100.0% 50.9%
3226974 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 52.0 4.48e-01 96.3% 76.8%
1228348 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.59 52.0 3.96e-01 100.0% 40.7%
3974053 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.59 45.0 4.21e-01 100.0% 66.0%
3771406 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 51.0 4.42e-01 96.3% 80.0%
3712782 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 38.0 3.85e-01 98.8% 66.3%
3999725 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 38.0 3.76e-01 98.8% 62.4%
3537236 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 50.0 4.30e-01 95.1% 80.8%
3495746 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 49.0 4.02e-01 96.3% 69.4%
3709314 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 50.0 4.46e-01 98.8% 75.8%
3270288 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 51.0 4.73e-01 97.5% 78.0%
3996204 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 50.0 4.42e-01 96.3% 66.7%
3507883 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 50.0 4.45e-01 96.3% 73.0%
3255850 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 50.0 4.18e-01 96.3% 56.4%
3765075 220.1.1.164 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26089 0.57 51.0 3.93e-01 98.8% 60.0%
3951474 1.1.5.9 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.57 39.0 2.95e-01 71.6% 74.8%
4533094 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 50.0 4.27e-01 96.3% 63.1%
3486509 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 49.0 4.43e-01 97.5% 73.0%
4118226 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 37.0 3.88e-01 100.0% 77.1%
4431199 1.1.5.9 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.55 40.0 3.01e-01 76.5% 88.0%
4432457 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.54 36.0 3.82e-01 100.0% 80.0%
3736175 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 37.0 3.73e-01 100.0% 69.4%
3517450 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.54 43.0 2.54e-01 92.6% 33.5%
3280076 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.53 44.0 3.94e-01 100.0% 63.5%
4030120 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 45.0 2.81e-01 96.3% 17.2%
3339169 4.1.1.415 ↗ beta barrels › SH3 › SH3 › SH3 › PNPOx_N 0.52 40.0 3.99e-01 100.0% 80.0%
5006751 71.1.1.8 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.52 45.0 3.50e-01 100.0% 79.5%
3290160 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.52 36.0 3.65e-01 100.0% 75.0%
4942017 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.51 43.0 3.89e-01 95.1% 85.2%
3506893 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.51 38.0 2.57e-01 76.5% 43.1%
4071824 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.51 36.0 3.69e-01 100.0% 81.3%
3178338 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.50 43.0 2.94e-01 100.0% 49.5%
D2 medium residues 88-134
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4lctB00 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.98 92.0 5.28e-01 100.0% 13.5%
1yzmA00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.95 75.0 7.61e-01 83.0% 84.8%
1s3qG00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.95 88.0 5.83e-01 100.0% 28.8%
3gonA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.94 76.0 5.25e-01 85.1% 29.9%
1cpqA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.94 86.0 6.08e-01 100.0% 36.4%
4u1cA01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.94 81.0 7.80e-01 93.6% 84.6%
1z0jB00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.93 77.0 7.45e-01 91.5% 80.4%
4b6xA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.93 87.0 7.48e-01 100.0% 69.6%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.93 83.0 5.88e-01 95.7% 36.3%
4fymF00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.92 78.0 4.88e-01 91.5% 20.1%
2hfsA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.92 80.0 5.46e-01 93.6% 30.1%
2chpA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.91 82.0 5.63e-01 100.0% 41.2%
3t46A00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.91 74.0 6.19e-01 89.4% 54.7%
3k59A06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.90 67.0 6.72e-01 78.7% 78.7%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.90 81.0 5.96e-01 100.0% 44.8%
4x5mA00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.89 74.0 5.94e-01 91.5% 48.8%
3tdvA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.89 77.0 4.90e-01 95.7% 21.8%
3t9jA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.89 80.0 5.54e-01 100.0% 32.6%
3htmA02 6.10.250.3030 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.89 59.0 6.32e-01 70.2% 80.0%
2gd5A00 6.10.140.1230 Special › Helix non-globular › Helix Hairpins › 0.89 79.0 5.54e-01 100.0% 33.1%
3kwoA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.88 79.0 5.43e-01 100.0% 31.5%
3nymA00 6.10.290.10 Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.88 77.0 5.56e-01 97.9% 71.0%
3ltoA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.87 71.0 4.95e-01 91.5% 30.6%
2wwxB00 1.20.1260.70 Mainly Alpha › Up-down Bundle › Ferritin › 0.87 77.0 4.99e-01 100.0% 23.5%
1sr2A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.87 72.0 5.26e-01 91.5% 36.2%
1yvwA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.87 73.0 5.74e-01 91.5% 46.7%
1luwA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.86 78.0 6.98e-01 100.0% 76.6%
1vmgA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.86 72.0 5.88e-01 91.5% 52.4%
1zs3A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.86 77.0 5.12e-01 100.0% 60.8%
2gs8A02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.85 72.0 5.03e-01 91.5% 30.7%
2rklF00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.84 73.0 7.15e-01 100.0% 90.4%
6he1B01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.83 71.0 6.30e-01 97.9% 67.2%
2oo2A00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.83 65.0 5.50e-01 85.1% 52.6%
3r6nA02 1.20.58.1060 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.83 72.0 5.01e-01 100.0% 30.3%
1kaeA03 1.20.5.1300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.83 59.0 5.58e-01 76.6% 63.6%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.82 61.0 5.57e-01 80.9% 60.3%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.82 72.0 5.62e-01 100.0% 49.0%
3b2eF00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.81 72.0 6.58e-01 100.0% 75.8%
4u72A01 1.20.58.480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 69.0 4.42e-01 100.0% 25.2%
4g09A03 1.20.5.1300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.79 56.0 5.31e-01 76.6% 63.6%
4rpfA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.78 60.0 4.31e-01 89.4% 30.1%
4ar9A02 1.10.390.20 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › 0.77 54.0 3.77e-01 74.5% 25.4%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.76 63.0 5.11e-01 100.0% 50.0%
2f93B00 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.74 57.0 5.58e-01 85.1% 84.3%
1aueB00 1.20.120.150 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain 0.73 58.0 4.68e-01 89.4% 51.1%
4gmnA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.69 57.0 3.23e-01 93.6% 8.5%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4410582 192.28.1.1 ↗ alpha bundles › Long alpha-hairpin › IDEAL domain › IDEAL domain › IDEAL 0.99 95.0 8.86e-01 100.0% 85.5%
3254191 912.1.1.0 ↗ few secondary structure elements › HIV-1 VPU cytoplasmic domain › HIV-1 VPU cytoplasmic domain › HIV-1 VPU cytoplasmic domain 0.99 94.0 8.25e-01 100.0% 72.3%
4640528 4146.1.1.0 ↗ alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like 0.98 78.0 8.42e-01 83.0% 97.5%
5013251 3291.1.1.195 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › H-kinase_dim 0.97 92.0 6.21e-01 100.0% 32.9%
4000811 3291.1.1.1 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.97 91.0 6.33e-01 100.0% 36.2%
4949979 605.1.1.2 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim 0.97 90.0 7.95e-01 100.0% 72.3%
4046023 622.1.1.1 ↗ alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.97 91.0 7.05e-01 100.0% 52.2%
4883518 304.1.1.0 ↗ a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain 0.96 77.0 6.69e-01 85.1% 58.8%
5051638 605.1.1.2 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim 0.96 90.0 8.44e-01 100.0% 85.5%
3976258 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.96 87.0 8.16e-01 97.9% 81.8%
4930198 605.1.1.2 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim 0.95 89.0 8.09e-01 100.0% 78.3%
4509295 3455.1.1.0 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors 0.95 79.0 6.31e-01 89.4% 49.4%
1406322 109.4.1.2096 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6, TPR_19, PF30363, PF30475 0.94 88.0 4.79e-01 100.0% 7.5%
4930709 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.94 90.0 5.65e-01 100.0% 24.1%
4235024 109.4.1.2782 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6, PF30363, PF30475 0.94 87.0 4.71e-01 100.0% 7.3%
4511641 109.4.1.3388 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16, PF30363 0.94 86.0 4.69e-01 100.0% 7.2%
4995146 138.1.1.0 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.93 86.0 6.77e-01 100.0% 52.2%
3738041 192.5.1.1 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 0.93 86.0 6.89e-01 100.0% 55.3%
991025 192.1.1.0 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.93 83.0 8.47e-01 97.9% 100.0%
3186698 192.17.1.0 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.93 85.0 7.01e-01 100.0% 58.7%
4936633 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.93 89.0 5.54e-01 100.0% 22.9%
3410968 192.17.1.0 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.93 85.0 7.33e-01 100.0% 67.1%
5009299 304.1.1.1 ↗ a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.93 81.0 5.60e-01 93.6% 32.6%
4963289 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.93 88.0 5.58e-01 100.0% 24.7%
3230775 192.1.1.25 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › VPS18_RING_C 0.92 85.0 6.26e-01 100.0% 42.7%
3240245 192.17.1.1 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › Rbsn 0.91 75.0 7.39e-01 89.4% 82.0%
5036797 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.91 82.0 5.44e-01 100.0% 27.6%
3507421 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.90 77.0 6.62e-01 91.5% 61.4%
5039485 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.90 82.0 5.20e-01 100.0% 23.0%
3965106 605.1.1.4 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.90 82.0 6.90e-01 100.0% 64.0%
3262528 138.1.1.0 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.90 81.0 6.73e-01 100.0% 82.5%
2098022 6155.1.1.1 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.90 82.0 6.63e-01 100.0% 55.3%
4958554 304.48.1.3 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.89 81.0 5.02e-01 100.0% 31.9%
5011606 2484.1.1.124 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.89 81.0 5.27e-01 100.0% 25.7%
4949471 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.89 83.0 5.40e-01 100.0% 26.9%
4433045 507.1.1.0 ↗ alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related 0.89 81.0 5.65e-01 100.0% 34.1%
3721261 192.3.1.1 ↗ alpha bundles › Long alpha-hairpin › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Sod_Fe_N 0.89 80.0 7.29e-01 97.9% 80.0%
3183271 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.88 79.0 5.10e-01 100.0% 24.1%
4469597 192.17.1.11 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › UVR 0.88 68.0 6.44e-01 87.2% 70.9%
4973347 515.1.1.4 ↗ alpha arrays › Transcription factor STAT-4 N-domain › Transcription factor STAT-4 N-domain › Transcription factor STAT-4 N-domain › EMC3_TMCO1 0.88 81.0 5.35e-01 100.0% 27.6%
4960168 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.88 80.0 5.34e-01 100.0% 28.5%
3741007 109.4.1.152 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RPN7 0.85 74.0 4.49e-01 100.0% 18.0%
3320255 605.3.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Nonstructural protein ns2, Nep, M1-binding domain › Nonstructural protein ns2, Nep, M1-binding domain 0.84 74.0 7.30e-01 100.0% 94.0%
5053329 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.83 72.0 5.30e-01 97.9% 37.5%
4988301 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.83 73.0 5.09e-01 100.0% 32.0%
5043090 5058.1.1.16 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 0.80 68.0 5.70e-01 95.7% 57.5%
4961158 5076.2.1.3 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › DUF4013 0.73 61.0 3.89e-01 97.9% 20.0%