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MF787246.1__ATG86382.1__LpeD_121__00075

Bact-Vir

MF787246.1__ATG86382.1__LpeD_121__00075

Identity

Accession:
MF787246 ↗
Kingdom:
phage

Quality

95.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Elpedvirus› Lactobacillus_phage_LpeD

TaxID: 2041210

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-89
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nrkA01 3.30.70.1630 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.74 51.0 4.52e-01 100.0% 50.5%
2p4bB02 3.30.200.100 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain 0.71 41.0 3.62e-01 100.0% 39.8%
3frnA01 3.10.129.70 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.69 42.0 3.22e-01 100.0% 30.2%
2n54B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 42.0 4.33e-01 100.0% 63.6%
3eliA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.68 60.0 4.70e-01 100.0% 79.2%
8gn6A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.65 56.0 3.57e-01 97.1% 98.5%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.65 57.0 4.68e-01 100.0% 77.2%
2m89A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 56.0 4.53e-01 100.0% 75.4%
1eurA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.63 56.0 3.54e-01 100.0% 96.1%
3d4gE03 2.60.40.3210 Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-N domain 0.63 42.0 3.67e-01 100.0% 45.5%
4oseB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.63 46.0 3.02e-01 76.5% 57.7%
3oh8A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 53.0 4.33e-01 98.5% 77.9%
4qwoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.62 56.0 4.48e-01 100.0% 69.7%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 52.0 4.34e-01 100.0% 74.2%
6g1yA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 54.0 4.49e-01 100.0% 72.5%
2ej9A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.61 52.0 3.88e-01 100.0% 42.6%
3nhqA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 53.0 4.45e-01 100.0% 72.3%
3g7gH00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.59 51.0 4.03e-01 100.0% 92.8%
4mjgA00 3.30.2030.30 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.59 50.0 3.83e-01 100.0% 38.4%
1ztuA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 52.0 4.05e-01 100.0% 58.3%
6u6pA01 3.30.1070.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle; Chain A › Cell division topological specificity factor MinE 0.59 45.0 4.36e-01 100.0% 73.1%
1cqaA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.58 52.0 4.30e-01 100.0% 70.7%
3o6qA02 3.30.70.2720 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 49.0 4.24e-01 100.0% 62.3%
4tpsA00 3.30.310.250 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA 0.57 49.0 3.99e-01 100.0% 75.0%
1swgC00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.57 49.0 4.07e-01 100.0% 97.6%
2g8sB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 51.0 3.22e-01 100.0% 98.6%
2k5gA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 47.0 3.63e-01 100.0% 63.9%
4p6zM01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 50.0 4.16e-01 100.0% 57.0%
3nbxX04 2.40.128.430 Mainly Beta › Beta Barrel › Lipocalin › 0.56 45.0 3.99e-01 92.6% 84.1%
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.56 47.0 4.50e-01 100.0% 83.1%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.56 47.0 4.74e-01 100.0% 95.5%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.56 37.0 3.98e-01 73.5% 83.9%
3lydA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.55 49.0 3.87e-01 100.0% 66.9%
1w63Q00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 49.0 3.83e-01 100.0% 47.3%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 47.0 3.65e-01 100.0% 84.0%
5x6vG00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 48.0 3.89e-01 100.0% 65.2%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.54 39.0 3.10e-01 100.0% 37.7%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 48.0 3.27e-01 100.0% 80.3%
2hf6A00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 47.0 3.71e-01 100.0% 46.3%
2wvxA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 39.0 2.68e-01 82.4% 35.1%
3h6rA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 43.0 3.39e-01 92.6% 65.8%
4a7kA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 39.0 3.08e-01 82.4% 74.7%
2joiA00 3.30.310.190 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.53 40.0 3.69e-01 100.0% 61.5%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.53 38.0 2.82e-01 77.9% 36.1%
4qpkB02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.52 47.0 3.76e-01 100.0% 53.0%
3bdrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 38.0 3.06e-01 80.9% 87.2%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 46.0 3.88e-01 100.0% 63.6%
1sil000 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 42.0 2.71e-01 94.1% 36.7%
1m3qA01 3.30.310.40 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.52 38.0 3.58e-01 95.6% 61.8%
1vkcA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 40.0 3.28e-01 86.8% 87.1%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 46.0 3.89e-01 100.0% 66.7%
3ecqA02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 45.0 3.03e-01 100.0% 34.5%
7ob9B01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.50 39.0 2.92e-01 88.2% 55.7%
4fflA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 38.0 2.69e-01 86.8% 50.2%
3i9sA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 39.0 3.05e-01 88.2% 91.3%
1y9lA00 2.40.128.230 Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM 0.50 39.0 3.43e-01 89.7% 91.8%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3245433 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.71 50.0 3.23e-01 98.5% 16.2%
4340109 2003.1.2.12 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO 0.70 43.0 2.62e-01 100.0% 10.4%
3229983 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.70 51.0 3.53e-01 98.5% 23.6%
3221321 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.70 51.0 3.40e-01 95.6% 20.8%
3226500 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.67 49.0 3.28e-01 98.5% 20.0%
3226237 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.67 50.0 3.34e-01 98.5% 21.2%
4071981 3018.1.1.0 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.67 55.0 5.39e-01 95.6% 84.0%
3217555 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.65 49.0 3.29e-01 98.5% 21.2%
3210916 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.65 50.0 3.55e-01 98.5% 27.3%
3707684 243.11.1.0 ↗ a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein 0.65 41.0 4.24e-01 92.6% 67.7%
3838482 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.65 58.0 3.83e-01 100.0% 33.1%
5038973 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 58.0 3.61e-01 100.0% 97.8%
4194924 3018.1.1.0 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.64 52.0 4.92e-01 94.1% 80.0%
3700743 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.63 43.0 4.30e-01 100.0% 68.6%
3230102 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.63 48.0 3.60e-01 98.5% 33.5%
3437479 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.63 45.0 4.60e-01 100.0% 78.5%
4673207 256.1.1.10 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › MinE 0.62 49.0 4.59e-01 100.0% 69.4%
3220833 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.62 57.0 3.70e-01 100.0% 45.1%
3224106 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.61 56.0 3.58e-01 100.0% 33.4%
4646762 3480.1.1.1 ↗ a+b duplicates or obligate multimers › Lipoprotein-associated type-17-domain › Lipoprotein-associated type-17-domain › Lipoprotein-associated type-17-domain › Lipoprotein_17 0.61 48.0 4.56e-01 89.7% 95.3%
3238738 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.61 55.0 3.62e-01 100.0% 37.4%
4956613 882.1.1.4 ↗ a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding 0.60 40.0 3.28e-01 98.5% 33.6%
5051010 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 54.0 4.60e-01 100.0% 62.7%
4471230 223.10.1.1 ↗ a+b three layers › Profilin-like › Stage II sporulation protein SA › Stage II sporulation protein SA › SpoIISA_toxin 0.60 50.0 4.00e-01 100.0% 47.1%
3213130 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.60 52.0 3.64e-01 100.0% 37.7%
3288165 323.1.1.5 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.60 51.0 3.70e-01 100.0% 49.8%
3211708 145.1.1.30 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › FBA_2 0.59 54.0 3.54e-01 100.0% 35.2%
3787968 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 52.0 3.17e-01 100.0% 95.1%
3219318 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.59 50.0 3.26e-01 98.5% 21.3%
3936023 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 44.0 2.89e-01 80.9% 21.0%
3240980 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.58 52.0 3.31e-01 100.0% 30.8%
3236279 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.58 51.0 3.38e-01 100.0% 35.5%
3236522 145.1.1.30 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › FBA_2 0.58 52.0 3.35e-01 100.0% 31.6%
3992388 872.3.1.5 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.58 52.0 4.23e-01 100.0% 56.0%
3227822 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.57 49.0 3.51e-01 100.0% 45.0%
4012135 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 51.0 3.21e-01 100.0% 95.5%
5059169 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 49.0 3.97e-01 100.0% 56.4%
3225818 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.56 50.0 3.38e-01 98.5% 27.9%
3225518 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.56 51.0 3.42e-01 100.0% 34.3%
4945274 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 50.0 4.09e-01 100.0% 64.8%
3325173 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 49.0 3.78e-01 100.0% 43.8%
3245986 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.56 50.0 3.44e-01 100.0% 37.8%
4261091 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 49.0 4.04e-01 100.0% 65.1%
3212107 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.56 49.0 3.31e-01 98.5% 29.6%
3506182 5.1.5.85 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_RFWD3 0.56 49.0 3.13e-01 100.0% 97.8%
3473504 221.1.2.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.56 48.0 4.79e-01 100.0% 95.7%
4030493 331.1.1.5 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.56 42.0 3.68e-01 95.6% 53.3%
3785267 221.1.2.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.55 46.0 4.55e-01 100.0% 89.3%
3223155 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.55 46.0 3.21e-01 97.1% 31.9%
3597359 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 48.0 3.78e-01 100.0% 46.7%
3787148 304.48.1.37 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_2 0.55 47.0 3.27e-01 100.0% 40.0%
3516953 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.55 46.0 3.34e-01 100.0% 46.6%
4027768 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 48.0 3.85e-01 100.0% 50.4%
4972028 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 47.0 3.68e-01 100.0% 51.6%
5024071 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 48.0 3.99e-01 100.0% 58.3%
4970558 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 49.0 3.94e-01 100.0% 59.2%
4034480 306.9.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › MecA substrate binding domain › MecA substrate binding domain › MecA 0.53 46.0 4.40e-01 100.0% 88.7%
5050640 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 47.0 3.77e-01 100.0% 52.6%
5046689 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 48.0 3.89e-01 100.0% 61.3%
4945301 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 48.0 3.68e-01 100.0% 49.3%
5044631 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 44.0 3.69e-01 100.0% 60.0%
5052141 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 47.0 3.65e-01 100.0% 55.3%
4939612 304.51.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.53 45.0 3.89e-01 100.0% 61.7%
3284913 3781.1.1.1 ↗ a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N 0.52 41.0 4.18e-01 95.6% 90.8%
5046621 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 43.0 3.69e-01 98.5% 60.8%
4979100 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 46.0 3.74e-01 98.5% 58.4%
3395675 223.2.1.20 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.51 46.0 3.50e-01 100.0% 60.6%
4957015 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.51 36.0 2.76e-01 79.4% 85.3%
5000533 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 43.0 3.78e-01 100.0% 69.7%
3244738 223.2.1.16 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.50 46.0 4.10e-01 100.0% 80.0%
4997744 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 37.0 3.22e-01 82.4% 80.9%
4937097 3636.1.1.0 ↗ a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.50 41.0 3.47e-01 95.6% 86.4%
3217510 390.1.1.7 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_3 0.50 40.0 3.37e-01 95.6% 50.8%
D2 high residues 93-166
PDB
Domain cluster: rep: MT270409.1__QJA42987.1__X__00045__D72-143
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2m1bA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 42.0 3.62e-01 83.8% 38.8%
3i9v700 3.30.920.80 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › NADH-quinone oxidoreductase, subunit 15 0.66 50.0 4.22e-01 82.4% 70.9%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.65 54.0 4.81e-01 93.2% 81.7%
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.64 50.0 4.53e-01 83.8% 95.9%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.62 53.0 3.74e-01 95.9% 71.9%
1opcA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 36.0 3.31e-01 81.1% 42.4%
1a6zA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.61 52.0 4.03e-01 100.0% 55.9%
2x49A04 3.40.50.12790 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 0.61 34.0 3.10e-01 95.9% 41.4%
2ft0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 45.0 3.22e-01 79.7% 35.6%
1xe4A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 43.0 3.37e-01 75.7% 72.6%
1kgsA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 35.0 3.20e-01 78.4% 43.9%
1a6aB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.59 47.0 4.55e-01 91.9% 82.0%
4d8pB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.59 50.0 4.58e-01 100.0% 86.3%
1wubA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.59 49.0 3.81e-01 95.9% 91.5%
3nctA00 3.40.50.11880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Plasmid SOS inhibition protein 0.58 49.0 4.03e-01 93.2% 56.2%
4rs2A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 42.0 3.22e-01 78.4% 80.0%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.57 51.0 3.51e-01 100.0% 60.0%
3zq7A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 35.0 3.24e-01 82.4% 44.6%
4uhtA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 35.0 3.17e-01 71.6% 43.1%
3d3sA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 40.0 3.21e-01 75.7% 53.5%
4kvxA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 40.0 3.27e-01 77.0% 63.2%
1zxuA00 2.40.160.200 Mainly Beta › Beta Barrel › Porin › LURP1-related 0.56 45.0 3.59e-01 90.5% 88.9%
2v1lA00 3.10.450.430 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF2787 0.56 45.0 3.88e-01 91.9% 65.9%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.56 48.0 4.18e-01 100.0% 77.5%
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.56 34.0 3.28e-01 100.0% 53.0%
1g6zA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 39.0 3.98e-01 94.6% 78.6%
5h8yD02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.55 42.0 3.17e-01 83.8% 82.8%
5nz7A01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.55 45.0 3.00e-01 94.6% 91.0%
2m87A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 33.0 3.04e-01 75.7% 42.7%
1vkcA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 39.0 3.25e-01 77.0% 61.2%
2k4jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 37.0 3.34e-01 100.0% 50.5%
3o0wA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 36.0 2.63e-01 70.3% 38.9%
2py5A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 38.0 2.98e-01 77.0% 95.7%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.54 43.0 2.85e-01 90.5% 74.6%
1tltA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 46.0 3.49e-01 97.3% 93.0%
2pmuC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 32.0 3.05e-01 79.7% 47.8%
3zgzD04 2.20.28.290 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.53 33.0 3.54e-01 100.0% 72.6%
4iglB00 2.180.10.10 Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core 0.53 43.0 2.54e-01 91.9% 84.5%
3htrA00 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.53 40.0 3.65e-01 97.3% 61.2%
3mmyA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 41.0 2.73e-01 89.2% 80.5%
1i12D00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 42.0 3.39e-01 91.9% 79.6%
3bt3A01 3.30.1900.10 Alpha Beta › 2-Layer Sandwich › glyoxalase-related enzyme like fold › glyoxalase-related enzyme like domain 0.52 34.0 3.47e-01 85.1% 68.1%
3e9mB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 46.0 3.41e-01 100.0% 93.4%
3qz4A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 43.0 2.94e-01 95.9% 88.2%
5w36B01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.51 36.0 3.00e-01 89.2% 40.3%
2nn6E00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.51 44.0 3.03e-01 97.3% 87.3%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4463651 101.1.2.8 ↗ alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.69 41.0 3.64e-01 71.6% 41.9%
1147832 101.1.2.8 ↗ alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.68 42.0 3.64e-01 83.8% 39.5%
2722572 3894.1.1.3 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M 0.68 50.0 4.04e-01 77.0% 51.9%
4464727 101.1.2.8 ↗ alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.68 40.0 3.56e-01 73.0% 42.3%
3969251 3523.1.1.3 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptC 0.65 44.0 3.58e-01 70.3% 54.3%
3990074 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.65 49.0 4.36e-01 79.7% 75.2%
3495079 77.3.1.5 ↗ beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › MORN_DRC7 0.64 57.0 3.89e-01 100.0% 55.5%
4873615 233.1.1.2 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_beta 0.63 51.0 4.83e-01 90.5% 79.3%
3423528 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.63 42.0 3.29e-01 70.3% 43.6%
3889588 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.63 53.0 4.17e-01 100.0% 60.0%
1512998 3953.1.1.1 ↗ a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3_N 0.62 42.0 4.08e-01 70.3% 90.6%
3917386 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.62 53.0 4.14e-01 100.0% 58.9%
4679966 3894.1.1.5 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › MORN_DRC7 0.62 45.0 4.29e-01 75.7% 77.6%
3719596 77.1.1.3 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_DRC7 0.62 52.0 4.11e-01 98.6% 72.9%
3987653 101.1.2.8 ↗ alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.61 38.0 3.52e-01 81.1% 45.9%
4232905 101.1.2.8 ↗ alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.61 38.0 3.36e-01 87.8% 42.2%
3683316 109.4.1.2506 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_3, PPR_long, TPR_24 0.61 37.0 2.14e-01 100.0% 6.0%
5041160 213.1.1.37 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_18 0.61 48.0 3.75e-01 85.1% 69.4%
185328 241.13.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA › Sif 0.60 47.0 4.08e-01 85.1% 63.5%
5029096 10.12.1.100 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Polysacc_synt_C 0.60 45.0 3.71e-01 81.1% 77.0%
2745 101.1.2.8 ↗ alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.59 34.0 3.15e-01 78.4% 43.3%
3694675 859.1.1.1 ↗ a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA 0.59 44.0 3.16e-01 81.1% 59.6%
1282743 101.1.2.8 ↗ alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.59 36.0 3.29e-01 82.4% 43.1%
4023805 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 42.0 4.10e-01 85.1% 69.4%
4928169 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.57 38.0 4.34e-01 97.3% 94.4%
185765 5084.5.1.13 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DUF4595 0.57 51.0 3.51e-01 100.0% 60.0%
3942523 213.1.1.27 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 0.57 40.0 3.23e-01 74.3% 72.9%
5049313 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.57 42.0 3.48e-01 79.7% 62.9%
5063947 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.57 41.0 3.29e-01 78.4% 65.6%
3753212 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.57 48.0 3.69e-01 100.0% 62.1%
3399255 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.57 46.0 4.01e-01 89.2% 82.6%
3928378 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 39.0 3.75e-01 78.4% 63.5%
1756103 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.56 34.0 3.42e-01 100.0% 60.3%
4525632 101.1.2.8 ↗ alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.56 35.0 3.21e-01 78.4% 45.2%
5018520 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 44.0 4.03e-01 86.5% 83.7%
3989733 213.1.1.25 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3 0.55 42.0 3.20e-01 79.7% 63.6%
3710426 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.54 43.0 3.87e-01 87.8% 68.6%
11150 2484.1.1.36 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 0.54 38.0 2.99e-01 77.0% 96.2%
3513229 101.1.2.8 ↗ alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.53 32.0 3.19e-01 78.4% 54.4%
3992749 10.1.1.8 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.53 46.0 3.18e-01 95.9% 46.3%
4178005 101.1.2.8 ↗ alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.53 33.0 3.03e-01 74.3% 44.2%
4380025 101.1.2.8 ↗ alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.53 36.0 3.16e-01 95.9% 46.1%
3355851 2484.1.1.110 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.52 43.0 2.92e-01 93.2% 78.0%
142888 5.1.2.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.52 43.0 2.94e-01 95.9% 88.2%
3357309 2484.1.1.110 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.52 42.0 2.83e-01 91.9% 72.2%
5006089 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 30.0 3.26e-01 100.0% 70.0%