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MF893271.1ATN94283.1X__00019

Bact-Vir

MF893271.1__ATN94283.1__X__00019

Identity

Accession:: MF893271 ↗
Kingdom:: phage

Quality

75.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lysinibacillus_phage_vB_LspM-01

TaxID: 2041389

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 104-200

PDB

Domain cluster: rep: MW824397.1__QZI91684.1__PODOV088v1_p0023__00023__D41-137

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1r3eA02	2.30.130.10	Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain	0.55	39.0	4.13e-01	87.6%	86.9%
1gff200	2.60.120.20	Mainly Beta › Sandwich › Jelly Rolls ›	0.51	43.0	3.58e-01	94.8%	84.2%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4990621	1.1.9.0 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain	0.57	42.0	4.53e-01	96.9%	93.8%
5019025	3156.1.1.13 ↗	beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cupredoxin_1	0.57	37.0	4.01e-01	99.0%	80.0%
4952117	3156.1.1.3 ↗	beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Copper-bind	0.54	37.0	3.82e-01	95.9%	73.7%
3758013	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	40.0	2.85e-01	81.4%	46.6%

D2 medium residues 1-50

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4fppA02	3.30.565.10	Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain	0.65	43.0	3.15e-01	70.0%	51.8%
6zhkA01	3.40.640.10	Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain)	0.61	45.0	2.82e-01	80.0%	99.6%
2b69A01	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.61	45.0	2.96e-01	82.0%	28.9%
2ocaA03	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.60	46.0	3.03e-01	84.0%	31.2%
6bwlA01	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.53	38.0	2.65e-01	82.0%	30.4%
4qpkB02	3.30.565.10	Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain	0.52	42.0	3.17e-01	92.0%	87.3%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4281430	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.65	47.0	3.01e-01	80.0%	28.1%
3261919	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.59	45.0	3.04e-01	84.0%	39.0%
3310885	101.1.1.28 ↗	alpha arrays › HTH › HTH › Three-helical HTH › SWIRM	0.57	47.0	3.68e-01	90.0%	67.6%
5033978	7577.1.1.4 ↗	a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Pyridoxal_deC	0.52	45.0	2.59e-01	94.0%	44.5%
3302022	2484.1.1.67 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3	0.51	39.0	3.09e-01	82.0%	54.0%
3270116	604.6.1.0 ↗	alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain	0.51	38.0	3.11e-01	82.0%	84.2%
4496788	2003.1.5.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases	0.50	44.0	2.56e-01	98.0%	32.5%

D3 medium residues 209-335_363-374_439-466

PDB

Domain cluster: rep: MW584195.1__QSM04178.1__PROPHIGD51-2_40__00040__D376-428_443-519_647-661

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF21722.5 best	Gly_rich_2	43.1	7.40e-11	71.3%	49.1%

CATH (22)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3cewA01	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.69	26.0	3.15e-01	100.0%	50.0%
2q30A01	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.69	26.0	3.51e-01	100.0%	63.6%
1tq5A01	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.68	30.0	3.77e-01	100.0%	65.7%
4ohvA01	2.60.120.1030	Mainly Beta › Sandwich › Jelly Rolls › Clp1, DNA binding domain	0.67	29.0	4.18e-01	99.4%	86.3%
1zx5A02	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.63	28.0	3.92e-01	100.0%	84.3%
3rnsA01	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.62	29.0	3.57e-01	100.0%	68.5%
4oi4C01	2.60.120.1030	Mainly Beta › Sandwich › Jelly Rolls › Clp1, DNA binding domain	0.61	27.0	3.76e-01	99.4%	82.1%
3rnsA02	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.60	29.0	3.64e-01	100.0%	75.0%
6m9sD01	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.59	27.0	3.44e-01	100.0%	71.3%
5wxuA02	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.59	30.0	3.08e-01	100.0%	50.6%
3waiA02	2.60.40.3390	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.59	27.0	3.43e-01	92.8%	72.0%
1omiA01	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.57	25.0	3.09e-01	98.8%	62.9%
5by5A00	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.57	28.0	3.29e-01	100.0%	66.1%
4ca9A00	2.60.120.340	Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain	0.56	30.0	3.87e-01	100.0%	88.8%
4zrxA02	2.60.120.260	Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like	0.54	26.0	3.16e-01	100.0%	69.5%
2qvsB02	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.53	26.0	2.93e-01	99.4%	55.7%
1wltA00	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.53	29.0	2.90e-01	99.4%	51.1%
3ejkA00	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.53	29.0	3.03e-01	100.0%	56.7%
3winE03	2.60.120.1090	Mainly Beta › Sandwich › Jelly Rolls ›	0.52	27.0	3.18e-01	100.0%	70.9%
7vt4A01	2.60.120.430	Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin	0.52	28.0	3.19e-01	100.0%	67.2%
3afgA03	2.60.120.380	Mainly Beta › Sandwich › Jelly Rolls ›	0.52	30.0	3.75e-01	98.2%	94.1%
5lz6A00	2.60.120.680	Mainly Beta › Sandwich › Jelly Rolls › GOLD domain	0.51	30.0	3.46e-01	95.8%	77.8%

ECOD (47)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4958880	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.65	26.0	3.35e-01	100.0%	61.1%
3342352	10.32.1.210 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GOLD_PATL1_C	0.62	30.0	3.63e-01	100.0%	69.1%
3300834	10.32.1.210 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GOLD_PATL1_C	0.59	30.0	3.56e-01	100.0%	68.7%
3246388	10.32.1.0 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like	0.59	28.0	3.26e-01	100.0%	61.3%
3231883	10.32.1.0 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like	0.59	32.0	3.85e-01	100.0%	81.0%
4352479	10.32.1.4 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L	0.57	27.0	3.23e-01	100.0%	64.5%
4955989	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.57	27.0	3.48e-01	99.4%	76.8%
5077191	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.55	32.0	4.12e-01	97.6%	97.0%
4948691	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.55	32.0	4.12e-01	99.4%	97.0%
4951628	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.55	26.0	3.08e-01	100.0%	61.9%
3928463	10.32.1.0 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like	0.55	33.0	4.11e-01	97.6%	95.2%
4351615	10.32.1.0 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like	0.55	30.0	3.97e-01	98.2%	95.8%
4002700	10.32.1.213 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883	0.55	28.0	3.34e-01	100.0%	72.7%
5047474	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.54	31.0	4.04e-01	98.8%	100.0%
4063161	10.32.1.0 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like	0.54	23.0	2.99e-01	100.0%	66.3%
3930491	10.32.1.213 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883	0.54	27.0	3.31e-01	100.0%	72.7%
3934054	10.4.1.1 ↗	beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB	0.54	32.0	3.78e-01	100.0%	83.2%
3929714	10.4.1.1 ↗	beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB	0.54	32.0	3.65e-01	100.0%	78.4%
4014484	10.32.1.0 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like	0.53	31.0	3.87e-01	97.6%	94.0%
4996864	10.12.1.4 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom	0.53	29.0	2.97e-01	99.4%	52.9%
4217963	10.32.1.19 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PPC	0.53	25.0	3.07e-01	100.0%	68.6%
3486965	10.32.1.0 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like	0.53	31.0	3.27e-01	97.0%	63.3%
3940710	10.4.1.1 ↗	beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB	0.53	32.0	3.74e-01	100.0%	83.9%
3514837	10.32.1.0 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like	0.53	27.0	3.15e-01	100.0%	67.8%
3928333	10.4.1.0 ↗	beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain	0.53	27.0	3.21e-01	100.0%	71.8%
3932914	10.4.1.1 ↗	beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB	0.53	31.0	3.87e-01	98.8%	93.3%
4997404	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.53	27.0	3.20e-01	100.0%	70.4%
3503404	10.32.1.0 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like	0.52	26.0	3.19e-01	100.0%	72.2%
4929792	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.52	30.0	3.80e-01	97.6%	94.0%
3521963	10.4.1.1 ↗	beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB	0.52	28.0	3.28e-01	100.0%	73.6%
3927998	10.4.1.1 ↗	beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB	0.52	31.0	3.77e-01	98.8%	89.1%
3925162	10.32.1.72 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TPPII_GBD	0.52	34.0	4.09e-01	98.2%	98.2%
4951746	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.52	33.0	4.05e-01	97.0%	99.0%
4460606	10.32.1.177 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › UPF0669	0.52	31.0	3.74e-01	99.4%	89.1%
4220410	10.32.1.4 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L	0.52	31.0	3.89e-01	97.0%	99.0%
3936620	10.4.1.1 ↗	beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB	0.52	30.0	3.70e-01	98.8%	89.1%
3933157	11.1.1.1085 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GBD_IRG7_N	0.51	31.0	3.85e-01	98.8%	99.0%
4531272	10.32.1.177 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › UPF0669	0.51	31.0	3.64e-01	100.0%	86.1%
5046630	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.51	31.0	3.65e-01	98.2%	87.0%
5048013	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.51	29.0	3.79e-01	97.0%	100.0%
3868830	10.32.1.4 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L	0.51	31.0	3.16e-01	99.4%	61.9%
5053827	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.51	32.0	3.94e-01	98.2%	99.0%
5042588	10.1.2.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED)	0.51	30.0	3.85e-01	96.4%	99.0%
3341432	10.32.1.4 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L	0.50	30.0	3.20e-01	95.8%	66.9%
3924594	10.32.1.4 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L	0.50	28.0	3.59e-01	96.4%	94.7%
4475065	10.32.1.4 ↗	beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L	0.50	30.0	3.64e-01	96.4%	92.4%
3938831	10.4.1.1 ↗	beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB	0.50	30.0	3.65e-01	98.8%	90.9%

D4 medium residues 375-402_416-438

PDB