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MF893271.1__ATN94330.1__X__00067

Bact-Vir

MF893271.1__ATN94330.1__X__00067

Identity

Accession:
MF893271 ↗
Kingdom:
phage

Quality

92.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lysinibacillus_phage_vB_LspM-01

TaxID: 2041389

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-94
PDB
Domain cluster: rep: MK448740.1__QBX17560.1__Javan367_0025__00025__D3-70
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.71 57.0 5.75e-01 86.8% 89.6%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 44.0 5.23e-01 71.1% 100.0%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 55.0 5.59e-01 88.2% 87.7%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.70 53.0 4.83e-01 86.8% 61.4%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 55.0 5.06e-01 92.1% 68.0%
2ox7A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.66 56.0 5.93e-01 98.7% 100.0%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 46.0 5.18e-01 77.6% 100.0%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 4.78e-01 80.3% 84.1%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 38.0 3.85e-01 71.1% 63.5%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 45.0 4.77e-01 90.8% 89.7%
2p1gA02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.61 45.0 4.17e-01 80.3% 98.0%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.60 42.0 4.05e-01 94.7% 62.6%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 44.0 4.38e-01 77.6% 100.0%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.60 50.0 4.19e-01 93.4% 78.9%
1dkiC01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.60 48.0 3.65e-01 90.8% 50.5%
1yoaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 45.0 3.51e-01 81.6% 88.7%
1i0rA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 44.0 3.44e-01 81.6% 90.1%
5e6tA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.57 44.0 4.10e-01 92.1% 67.0%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.57 47.0 3.65e-01 92.1% 57.6%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 38.0 4.08e-01 71.1% 89.2%
3tk9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 35.0 3.12e-01 73.7% 43.0%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 4.34e-01 92.1% 100.0%
2ok5A02 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 44.0 3.24e-01 88.2% 62.1%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 40.0 3.48e-01 77.6% 72.6%
2r0xA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 41.0 3.29e-01 81.6% 89.7%
3gasB02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 41.0 3.19e-01 80.3% 39.9%
1uscA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 41.0 3.16e-01 81.6% 84.3%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 40.0 3.43e-01 80.3% 52.4%
3bnkA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 39.0 3.02e-01 80.3% 83.3%
1yleA02 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.53 40.0 4.30e-01 80.3% 100.0%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 38.0 3.16e-01 77.6% 45.5%
1rfeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 39.0 3.27e-01 80.3% 52.9%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.52 36.0 3.42e-01 72.4% 91.3%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.52 37.0 4.04e-01 75.0% 90.8%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 40.0 3.31e-01 81.6% 51.8%
2i02A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 38.0 3.16e-01 78.9% 46.4%
3cp7A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 36.0 3.19e-01 72.4% 52.3%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.85e-01 96.1% 96.5%
5bncB01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 38.0 3.13e-01 80.3% 47.0%
2o8lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 36.0 3.29e-01 75.0% 55.4%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 38.0 3.19e-01 81.6% 50.3%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 38.0 3.20e-01 78.9% 50.0%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 44.0 3.37e-01 97.4% 90.7%
2nr4A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 41.0 3.51e-01 93.4% 54.1%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 38.0 3.02e-01 80.3% 44.0%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 38.0 3.28e-01 81.6% 54.0%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 36.0 3.12e-01 77.6% 52.8%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4071824 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.72 58.0 5.92e-01 86.8% 92.0%
4432457 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 55.0 5.69e-01 82.9% 100.0%
5080336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 53.0 5.66e-01 89.5% 95.3%
5029031 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 50.0 5.50e-01 82.9% 98.3%
3501699 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 53.0 5.26e-01 92.1% 82.5%
3496659 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 49.0 5.41e-01 82.9% 100.0%
3256498 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 46.0 5.20e-01 89.5% 100.0%
3596676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 55.0 5.25e-01 92.1% 77.8%
3237262 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 53.0 4.70e-01 90.8% 60.9%
3622137 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 54.0 5.12e-01 90.8% 76.7%
3663761 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 52.0 4.66e-01 85.5% 65.7%
3581143 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.65 44.0 4.74e-01 75.0% 83.1%
3236689 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 44.0 5.02e-01 80.3% 98.2%
3877938 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 52.0 5.02e-01 92.1% 76.7%
3395948 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.65 45.0 5.08e-01 77.6% 100.0%
3313119 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.64 51.0 5.08e-01 85.5% 82.5%
3811611 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 50.0 5.12e-01 86.8% 90.7%
3274551 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 51.0 5.18e-01 89.5% 93.3%
5057900 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.63 50.0 4.09e-01 88.2% 82.1%
3669492 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 49.0 4.05e-01 85.5% 48.6%
3721116 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 48.0 4.65e-01 85.5% 74.1%
3465976 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 47.0 4.97e-01 82.9% 100.0%
3333322 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.60 49.0 4.06e-01 89.5% 52.6%
3931993 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 43.0 4.60e-01 96.1% 98.3%
3429682 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 45.0 4.57e-01 82.9% 86.7%
3248246 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 39.0 3.31e-01 71.1% 61.5%
3762030 219.1.1.14 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin 0.57 42.0 3.65e-01 81.6% 64.0%
3812274 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 43.0 3.69e-01 85.5% 63.8%
3935130 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 38.0 4.25e-01 84.2% 98.2%
3707347 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 37.0 4.10e-01 81.6% 96.4%
3933782 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.56 43.0 4.19e-01 85.5% 89.4%
3279607 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.55 45.0 4.10e-01 88.2% 100.0%
4136160 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.55 42.0 3.88e-01 82.9% 63.0%
3612184 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 38.0 4.16e-01 88.2% 93.3%
3971136 1.13.1.2 ↗ beta barrels › cradle loop barrel › Arginine N-succinyltransferase alpha chain C-terminal domain › Arginine N-succinyltransferase alpha chain C-terminal domain › PF29831 0.55 41.0 4.41e-01 78.9% 100.0%
5057004 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.55 41.0 3.30e-01 80.3% 43.3%
4003171 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 40.0 4.03e-01 80.3% 88.7%
3835464 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 41.0 4.21e-01 82.9% 95.7%
3288278 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.54 41.0 3.42e-01 80.3% 49.6%
2429452 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.54 41.0 3.43e-01 80.3% 50.0%
3340900 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 37.0 3.93e-01 75.0% 84.6%
3359784 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.54 37.0 3.92e-01 75.0% 84.6%
3832128 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 45.0 4.22e-01 94.7% 77.9%
3801791 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 38.0 3.98e-01 76.3% 86.2%
5064875 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.54 40.0 3.25e-01 78.9% 42.0%
3602499 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.54 40.0 3.34e-01 80.3% 46.2%
5071939 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.54 40.0 3.19e-01 80.3% 42.1%
134018 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.53 41.0 3.27e-01 84.2% 44.4%
3998029 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 42.0 3.84e-01 88.2% 76.2%
3493294 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 43.0 3.55e-01 92.1% 75.2%
4998991 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.52 39.0 3.21e-01 78.9% 45.7%
3283546 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.52 39.0 3.17e-01 78.9% 46.2%
4125768 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.52 40.0 3.23e-01 81.6% 45.3%
3900957 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 41.0 3.50e-01 88.2% 63.8%
5016426 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.52 39.0 3.09e-01 80.3% 42.1%
4993029 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.52 38.0 3.15e-01 80.3% 93.3%
3164640 5084.1.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › TbpB_B_D 0.52 38.0 2.82e-01 80.3% 50.7%
5062740 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.51 40.0 3.06e-01 84.2% 80.0%
4521524 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.51 38.0 3.18e-01 80.3% 46.4%
5018380 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.51 39.0 3.12e-01 81.6% 46.0%
168988 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.51 38.0 3.20e-01 78.9% 49.6%
5002629 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.51 42.0 3.53e-01 93.4% 50.7%
4930482 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.51 41.0 3.62e-01 97.4% 57.6%
3972645 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.51 40.0 3.43e-01 90.8% 56.3%
3828348 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 37.0 3.96e-01 82.9% 100.0%
4960214 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.50 38.0 3.02e-01 81.6% 43.1%
3766764 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.50 40.0 2.73e-01 88.2% 41.1%
4795566 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.50 35.0 3.70e-01 73.7% 95.5%
3953421 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.50 40.0 3.33e-01 88.2% 75.0%