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MF893271.1__ATN94346.1__X__00083
Bact-VirMF893271.1__ATN94346.1__X__00083
Identity
- Accession:
- MF893271 ↗
- Kingdom:
- phage
Quality
82.5
mean pLDDT
Taxonomy
TaxID: 2041389
Cluster
View cluster (166 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 180-300_361-368
Domain cluster:
rep: NC_062753.1__YP_010357483.1__M1M31_gp41__00041__D163-291_335-364
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03864.23 best | Phage_cap_E | 50.0 | 3.20e-13 | 100.0% | 37.8% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bjqA00 | 3.90.1690.10 | Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain | 0.79 | 75.0 | 5.54e-01 | 100.0% | 56.1% |
| 2pk8A00 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.78 | 54.0 | 6.24e-01 | 89.1% | 96.8% |
| 2e0zC03 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.76 | 54.0 | 6.16e-01 | 100.0% | 97.9% |
| 1ohgA02 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.74 | 56.0 | 6.21e-01 | 100.0% | 97.1% |
| 6xgpB01 | 3.30.1930.10 | Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain | 0.72 | 67.0 | 6.69e-01 | 100.0% | 100.0% |
| 3bqwA02 | 3.30.1930.10 | Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain | 0.70 | 66.0 | 6.45e-01 | 100.0% | 96.4% |
| 1yueA03 | 3.30.2320.40 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › | 0.64 | 54.0 | 5.54e-01 | 100.0% | 94.2% |
| 6vq6I01 | 3.30.2320.30 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal | 0.59 | 42.0 | 4.54e-01 | 94.6% | 88.0% |
| 3we0A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 45.0 | 3.60e-01 | 94.6% | 91.5% |
| 1ygyB03 | 3.30.1330.90 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 | 0.51 | 41.0 | 4.03e-01 | 90.7% | 79.1% |
| 1r6xA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 38.0 | 3.25e-01 | 98.4% | 47.4% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2443966 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.80 | 74.0 | 5.10e-01 | 100.0% | 49.4% |
| 333200 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.80 | 76.0 | 5.57e-01 | 100.0% | 56.4% |
| 11367 | 2485.3.1.6 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › ENCP4 | 0.78 | 54.0 | 6.24e-01 | 89.1% | 96.8% |
| 2640765 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.75 | 71.0 | 5.03e-01 | 100.0% | 54.4% |
| 1005479 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.70 | 66.0 | 4.68e-01 | 100.0% | 52.7% |
| 4125320 | 298.4.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH | 0.70 | 40.0 | 4.78e-01 | 93.8% | 84.7% |
| 4988094 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.69 | 66.0 | 5.08e-01 | 100.0% | 59.2% |
| 4638799 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.66 | 40.0 | 4.09e-01 | 91.5% | 61.6% |
| 3965498 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.65 | 61.0 | 4.43e-01 | 100.0% | 52.5% |
| 2989363 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.64 | 59.0 | 4.41e-01 | 100.0% | 53.6% |
| 2989356 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.63 | 58.0 | 4.40e-01 | 100.0% | 53.1% |
| 5002389 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.61 | 57.0 | 4.36e-01 | 100.0% | 56.1% |
| 5080806 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.61 | 57.0 | 4.32e-01 | 100.0% | 57.9% |
| 4121802 | 3010.1.1.2 ↗ | a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › Lon_C | 0.56 | 38.0 | 4.15e-01 | 87.6% | 85.7% |
| 3337044 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.54 | 46.0 | 3.45e-01 | 93.8% | 81.6% |
| 4978275 | 4076.3.1.5 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C | 0.53 | 20.0 | 2.84e-01 | 76.0% | 72.7% |
| 4984209 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.51 | 30.0 | 3.14e-01 | 76.0% | 60.0% |
D2
medium
residues 48-68_94-178
Domain cluster:
rep: ON191531.1__URG17382.1__Mbo2_012__00012__D100-204
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bqwA01 | 3.15.30.10 | Alpha Beta › Super Roll › putative capsid protein of prophage fold › putative capsid protein of prophage domain like | 0.68 | 61.0 | 4.85e-01 | 98.1% | 63.8% |
| 1td6A01 | 1.20.1480.10 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › hypothetical protein mp506/mpn330, domain 1 | 0.54 | 28.0 | 2.86e-01 | 98.1% | 52.0% |
| 2z99A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 27.0 | 3.03e-01 | 72.6% | 62.1% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3216054 | 5001.1.1.66 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg | 0.59 | 47.0 | 3.41e-01 | 84.9% | 92.0% |
| None | — | 0.56 | 44.0 | 3.12e-01 | 86.8% | 63.2% | |
| 4345169 | 101.1.1.33 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 43.0 | 3.87e-01 | 83.0% | 84.8% |
| 3997467 | 4300.1.1.0 ↗ | beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like | 0.54 | 37.0 | 3.09e-01 | 70.8% | 43.8% |
| 3973139 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 41.0 | 3.84e-01 | 83.0% | 88.9% |
| 3680555 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.52 | 38.0 | 4.02e-01 | 75.5% | 96.8% |
| 3996360 | 109.2.1.5 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Trehalase | 0.51 | 32.0 | 2.30e-01 | 88.7% | 19.8% |