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MF893340.1__ATN92889.1__PPSC2_126__00126

Bact-Vir

MF893340.1__ATN92889.1__PPSC2_126__00126

Identity

Accession:
MF893340 ↗
Kingdom:
phage

Quality

77.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-85
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gzsB00 1.10.4120.10 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › SopE-like, GEF domain 0.74 52.0 3.94e-01 72.6% 63.6%
4i9oA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.71 63.0 6.19e-01 95.9% 91.0%
2aplA01 1.10.8.330 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like 0.68 58.0 6.01e-01 93.2% 100.0%
2bg1A01 3.90.1310.40 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › 0.68 59.0 5.78e-01 91.8% 89.6%
2efeA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.68 46.0 4.47e-01 71.2% 63.0%
3jrqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.68 47.0 3.18e-01 72.6% 32.1%
3vpxB02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 49.0 3.62e-01 82.2% 41.7%
7wboA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.64 54.0 4.02e-01 91.8% 76.1%
2lrmA00 1.10.890.30 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein 0.62 51.0 4.96e-01 97.3% 82.1%
3npiB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 45.0 3.32e-01 79.5% 40.5%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.62 43.0 4.83e-01 72.6% 94.7%
3ejbH02 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.62 49.0 3.42e-01 89.0% 65.6%
4ei7A02 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.61 46.0 3.26e-01 82.2% 98.7%
7pjdC01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.61 50.0 3.87e-01 91.8% 75.0%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 51.0 4.55e-01 91.8% 77.7%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 45.0 3.09e-01 80.8% 85.8%
1ikpA02 3.90.1350.10 Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain 0.60 47.0 3.71e-01 86.3% 91.1%
3fgrA02 1.10.439.20 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Phospholipase B-like, domain 2 0.59 41.0 3.43e-01 71.2% 64.1%
5ayvA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.59 49.0 4.15e-01 94.5% 94.4%
5xjnA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.59 49.0 3.11e-01 94.5% 43.4%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.58 40.0 3.83e-01 71.2% 61.2%
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.58 41.0 4.20e-01 74.0% 97.1%
3b0cW00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.57 42.0 4.28e-01 78.1% 91.8%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 39.0 3.42e-01 71.2% 58.0%
3lkbA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 49.0 3.58e-01 100.0% 69.8%
2gbbB00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.57 48.0 3.88e-01 100.0% 57.4%
2qytA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.56 48.0 4.41e-01 100.0% 97.0%
3o60A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 50.0 3.66e-01 95.9% 75.8%
2klqA00 1.20.58.870 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 46.0 3.97e-01 90.4% 69.3%
2yx8A00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.56 38.0 3.73e-01 71.2% 64.2%
1t07A00 1.10.3880.10 Mainly Alpha › Orthogonal Bundle › YggX-like › Fe(II) trafficking protein YggX 0.55 44.0 4.27e-01 87.7% 92.6%
4bwcA02 1.10.439.20 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Phospholipase B-like, domain 2 0.54 43.0 3.78e-01 90.4% 82.9%
1f14A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 43.0 3.32e-01 98.6% 75.5%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3748217 103.4.1.2 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M 0.77 70.0 5.84e-01 97.3% 67.5%
3230949 103.4.1.1 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX 0.75 66.0 6.55e-01 94.5% 94.7%
3455 636.1.1.3 alpha arrays › SopE-like GEF domain › SopE-like GEF domain › SopE-like GEF domain › SopE_GEF 0.74 52.0 3.94e-01 72.6% 63.6%
3267780 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.74 50.0 3.32e-01 71.2% 18.2%
3252296 601.55.1.1 alpha bundles › Four-helical up-and-down bundle › anti-complement domain of BBK32 › anti-complement domain of BBK32 › NCA2 0.74 51.0 4.65e-01 95.9% 54.7%
3904347 6026.1.1.0 alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain 0.74 47.0 4.72e-01 71.2% 64.0%
4576399 108.1.1.29 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.72 50.0 4.79e-01 72.6% 67.1%
3251657 142.1.1.5 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SRI 0.72 64.0 6.29e-01 100.0% 93.8%
4929803 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.71 50.0 3.73e-01 74.0% 31.5%
3008422 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.71 49.0 4.56e-01 72.6% 61.3%
3413935 108.1.1.97 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.71 50.0 4.65e-01 72.6% 66.7%
3365302 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.71 63.0 4.23e-01 100.0% 27.5%
3245673 103.4.1.0 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.70 61.0 5.20e-01 95.9% 92.2%
3270778 108.1.1.96 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.68 55.0 4.95e-01 87.7% 82.0%
3783238 5041.1.1.15 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › Tmemb_170 0.68 58.0 5.11e-01 100.0% 76.5%
3310266 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.67 57.0 5.79e-01 95.9% 98.6%
4940509 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.67 44.0 3.97e-01 74.0% 49.0%
3882597 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.65 56.0 5.29e-01 100.0% 92.2%
4941346 103.4.1.0 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.65 51.0 5.13e-01 89.0% 92.0%
5010630 6132.1.1.0 alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain 0.64 42.0 4.39e-01 72.6% 75.4%
4565825 604.39.1.9 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › Vut_1 0.64 45.0 3.33e-01 74.0% 28.7%
3494404 1045.1.1.0 alpha bundles › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 0.63 49.0 4.58e-01 87.7% 74.7%
4358519 547.1.1.1 alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.63 45.0 4.11e-01 76.7% 69.0%
5071678 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 48.0 4.01e-01 100.0% 46.9%
3961693 106.1.1.11 alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.62 56.0 4.32e-01 100.0% 83.7%
3299872 5063.1.1.3 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › NADH-u_ox-rdase 0.62 44.0 4.27e-01 75.3% 72.9%
3515411 3877.1.1.0 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.62 42.0 3.12e-01 72.6% 25.4%
3282584 191.1.1.18 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_14 0.62 52.0 4.38e-01 93.2% 100.0%
4937236 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.61 43.0 3.91e-01 74.0% 55.0%
4170809 108.1.1.73 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.61 50.0 4.69e-01 89.0% 77.8%
5063707 3843.1.1.0 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.61 43.0 4.19e-01 72.6% 67.5%
4939616 633.12.1.0 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.61 42.0 4.03e-01 71.2% 77.6%
4523250 108.1.1.74 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7+EF-hand_8 0.61 50.0 4.66e-01 89.0% 77.8%
3958934 5067.1.1.0 alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain 0.60 51.0 3.88e-01 95.9% 81.1%
3598526 2484.1.1.1 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.60 51.0 3.53e-01 95.9% 36.9%
3347379 3470.1.1.26 extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › DUF543 0.60 42.0 4.43e-01 72.6% 93.8%
3330798 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.60 50.0 3.44e-01 100.0% 75.1%
3719152 3939.1.1.0 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain 0.59 49.0 4.01e-01 100.0% 49.4%
3615624 101.11.1.0 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.59 45.0 3.99e-01 80.8% 74.3%
4149728 547.1.1.1 alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.58 44.0 4.31e-01 83.6% 95.0%
3659606 3361.1.1.5 alpha bundles › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › PF28983 0.58 49.0 4.28e-01 95.9% 85.2%
4250236 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.58 40.0 2.78e-01 72.6% 20.4%
3958593 5043.2.1.0 extended segments › Sensor proteins transmembrane domains › NarQ transmembrane domain › NarQ transmembrane domain 0.57 50.0 4.29e-01 100.0% 68.3%
3787915 3711.1.1.15 alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › PXB 0.57 48.0 3.62e-01 97.3% 93.8%
4629417 140.1.1.7 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 0.57 44.0 3.52e-01 83.6% 60.0%
4535655 140.1.1.4 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e,DALR_2 0.57 44.0 3.42e-01 83.6% 54.4%
3530812 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.56 47.0 4.31e-01 93.2% 83.2%
3428080 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.56 46.0 3.27e-01 98.6% 78.2%
4637522 547.1.1.1 alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.55 43.0 3.81e-01 90.4% 73.0%
4057487 101.1.1.16 alpha arrays › HTH › HTH › Three-helical HTH › HTH_WhiA 0.53 42.0 3.95e-01 86.3% 78.9%
4962486 191.1.1.10 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_6 0.52 44.0 3.76e-01 100.0% 57.6%
5039692 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.51 45.0 4.15e-01 100.0% 75.8%
4257452 7014.1.1.0 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain 0.51 38.0 3.26e-01 78.1% 61.8%
4971237 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.50 45.0 3.92e-01 100.0% 68.2%