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MF893340.1__ATN92892.1__PPSC2_129__00129

Bact-Vir

MF893340.1__ATN92892.1__PPSC2_129__00129

Identity

Accession:
MF893340 ↗
Kingdom:
phage

Quality

76.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vandenendeviridae› Shenlongvirus› Pseudomonas_phage_PPSC2

TaxID: 2041350

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 36-109
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 47.0 5.04e-01 86.5% 76.2%
8c5yA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 61.0 4.67e-01 100.0% 77.1%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 57.0 5.52e-01 94.6% 86.6%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 44.0 4.61e-01 89.2% 72.5%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 43.0 4.59e-01 89.2% 74.2%
1sezA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 47.0 3.53e-01 79.7% 32.2%
1fguB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 55.0 5.00e-01 100.0% 81.0%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.63 51.0 4.42e-01 89.2% 99.1%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.63 37.0 2.96e-01 73.0% 29.1%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.63 53.0 4.59e-01 94.6% 97.4%
1gm5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 52.0 4.77e-01 98.6% 70.6%
3gd6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 50.0 4.11e-01 93.2% 89.4%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 42.0 3.49e-01 73.0% 97.7%
3rcyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 49.0 4.02e-01 90.5% 78.0%
4gxbA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 47.0 4.20e-01 83.8% 85.6%
3gw6D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 42.0 3.28e-01 73.0% 73.9%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.60 47.0 4.22e-01 86.5% 100.0%
1jpdX01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 48.0 4.41e-01 90.5% 99.0%
1ae2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 48.0 4.60e-01 91.9% 90.7%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 46.0 3.91e-01 89.2% 85.7%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 42.0 3.27e-01 79.7% 77.3%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.57 41.0 3.41e-01 86.5% 44.0%
3cyjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 47.0 4.05e-01 94.6% 91.8%
2ar5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 44.0 3.87e-01 87.8% 95.7%
1vq8B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 45.0 3.76e-01 90.5% 81.8%
3op2A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 44.0 3.72e-01 87.8% 86.4%
2oktA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 45.0 3.87e-01 93.2% 90.6%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 44.0 3.91e-01 87.8% 93.7%
1i7dA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.55 47.0 3.87e-01 97.3% 92.9%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.55 47.0 4.09e-01 94.6% 79.6%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 45.0 4.48e-01 97.3% 87.2%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.54 40.0 3.47e-01 79.7% 59.8%
4dduA07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.53 45.0 4.07e-01 98.6% 93.5%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 40.0 3.32e-01 82.4% 83.8%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 3.54e-01 81.1% 83.2%
1gkuB07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.52 46.0 4.13e-01 97.3% 93.1%
3wa2X01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.84e-01 98.6% 70.1%
1jhnA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 37.0 2.62e-01 74.3% 34.1%
1o5yA00 3.10.690.10 Alpha Beta › Roll › Bifunctional nuclease domain › Bifunctional nuclease domain 0.52 44.0 3.67e-01 98.6% 91.6%
8in8C01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 41.0 2.91e-01 90.5% 95.4%
3mi6A01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.51 45.0 3.01e-01 100.0% 63.8%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 42.0 4.19e-01 87.8% 97.3%
1na8B00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.51 34.0 2.85e-01 70.3% 72.4%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4602887 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.81 67.0 6.77e-01 98.6% 87.8%
3268888 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.72 62.0 5.86e-01 100.0% 78.9%
3460576 109.3.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.72 54.0 3.72e-01 81.1% 31.9%
3948467 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 47.0 5.02e-01 87.8% 76.9%
4015435 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.68 62.0 5.67e-01 100.0% 80.0%
3670182 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.67 57.0 4.83e-01 94.6% 60.0%
3326221 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 59.0 5.43e-01 100.0% 90.5%
3645341 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.65 56.0 4.35e-01 95.9% 49.7%
3307397 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 59.0 4.74e-01 100.0% 61.4%
3284948 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 58.0 5.59e-01 100.0% 96.5%
4945682 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 57.0 4.80e-01 98.6% 64.0%
3404941 220.1.1.15 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5 0.65 49.0 3.81e-01 82.4% 73.5%
3591102 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.65 50.0 4.05e-01 85.1% 84.7%
5068131 2.1.1.17 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.65 59.0 5.39e-01 98.6% 80.0%
5008002 2.1.1.17 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.64 55.0 5.03e-01 98.6% 71.6%
5052424 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.64 57.0 4.62e-01 100.0% 56.4%
4027369 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 57.0 5.04e-01 100.0% 71.4%
3250605 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.62 53.0 4.52e-01 95.9% 96.0%
5021275 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 48.0 4.31e-01 87.8% 86.4%
4929844 2.1.1.135 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.61 51.0 4.92e-01 98.6% 94.4%
3251342 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.61 50.0 4.32e-01 91.9% 97.5%
3287981 2.1.1.94 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TLP1_add_C 0.61 52.0 5.24e-01 94.6% 93.3%
3990002 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.61 45.0 4.34e-01 79.7% 90.6%
5010552 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.60 52.0 4.36e-01 97.3% 90.0%
3412668 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.60 48.0 4.13e-01 87.8% 97.5%
3502587 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.60 42.0 3.76e-01 73.0% 76.2%
5800 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.60 39.0 4.39e-01 78.4% 98.0%
3658408 4325.1.1.13 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF4371 0.60 42.0 4.23e-01 74.3% 98.7%
5071482 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.59 51.0 4.35e-01 97.3% 92.8%
5002173 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 47.0 4.50e-01 90.5% 78.9%
3316240 2003.1.2.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.58 42.0 3.17e-01 75.7% 51.8%
3184285 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.58 43.0 3.21e-01 81.1% 85.9%
4031371 264.2.1.1 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.58 50.0 4.12e-01 98.6% 90.0%
3881440 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.57 49.0 4.17e-01 97.3% 96.0%
3514575 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 42.0 3.79e-01 79.7% 90.5%
5018575 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 42.0 3.69e-01 90.5% 51.3%
4971256 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.56 50.0 4.19e-01 98.6% 93.6%
3911618 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.56 46.0 3.65e-01 95.9% 82.3%
5022394 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.56 47.0 4.08e-01 97.3% 95.8%
3783089 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.55 40.0 3.50e-01 78.4% 51.7%
3578584 5.1.8.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.55 43.0 3.80e-01 85.1% 78.2%
1627398 2002.1.1.174 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C 0.55 36.0 4.09e-01 78.4% 90.9%
3947062 2484.1.1.194 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.54 45.0 3.38e-01 93.2% 83.6%
3482713 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 38.0 3.17e-01 85.1% 40.7%
3832354 4246.1.1.0 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit 0.54 41.0 3.15e-01 83.8% 97.8%
3932932 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.53 38.0 3.47e-01 77.0% 85.7%
3998245 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 40.0 3.42e-01 82.4% 81.6%
3990973 2484.1.1.107 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.51 43.0 3.51e-01 100.0% 95.0%
3956610 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.51 42.0 3.10e-01 95.9% 68.0%
3217379 896.1.1.2 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 0.51 38.0 3.55e-01 79.7% 86.3%
3614175 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.51 30.0 2.69e-01 78.4% 39.1%