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MF893340.1__ATN92921.1__PPSC2_158__00158
Bact-VirMF893340.1__ATN92921.1__PPSC2_158__00158
Identity
- Accession:
- MF893340 ↗
- Kingdom:
- phage
Quality
88.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Vandenendeviridae›
Shenlongvirus›
Pseudomonas_phage_PPSC2
TaxID: 2041350
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-94
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kvtA00 | 3.30.730.30 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein | 0.73 | 44.0 | 4.96e-01 | 91.3% | 78.9% |
| 8p2bA01 | 3.90.1010.20 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.64 | 26.0 | 2.76e-01 | 70.7% | 41.2% |
| 3c19A02 | 3.10.20.300 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain | 0.64 | 30.0 | 3.28e-01 | 70.7% | 51.3% |
| 2g2sA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.63 | 30.0 | 3.48e-01 | 72.8% | 60.9% |
| 1krlA00 | 6.20.50.130 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.63 | 27.0 | 3.63e-01 | 71.7% | 79.5% |
| 2d9wA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.62 | 35.0 | 3.29e-01 | 89.1% | 44.5% |
| 2l4vA00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 30.0 | 2.63e-01 | 72.8% | 29.6% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.60 | 29.0 | 3.45e-01 | 72.8% | 68.4% |
| 1ko2A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.59 | 43.0 | 3.25e-01 | 78.3% | 85.2% |
| 6f1uK02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.58 | 45.0 | 3.85e-01 | 81.5% | 89.7% |
| 6gp1A00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.58 | 28.0 | 3.23e-01 | 72.8% | 60.0% |
| 1m2xA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.57 | 41.0 | 3.18e-01 | 76.1% | 88.6% |
| 2fggA01 | 3.30.160.240 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 | 0.57 | 43.0 | 4.72e-01 | 96.7% | 98.7% |
| 3o2iA00 | 3.30.70.2710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 37.0 | 3.73e-01 | 89.1% | 65.6% |
| 2k4nA00 | 3.30.720.70 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.55 | 39.0 | 3.69e-01 | 96.7% | 62.2% |
| 2z6oA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.54 | 45.0 | 3.77e-01 | 92.4% | 81.9% |
| 4i1sB00 | 4.10.80.340 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › | 0.54 | 30.0 | 3.84e-01 | 78.3% | 98.1% |
| 1xteA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.53 | 47.0 | 4.40e-01 | 98.9% | 79.3% |
| 3iq2A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.53 | 47.0 | 4.32e-01 | 100.0% | 80.5% |
| 1a6aB01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.53 | 38.0 | 3.91e-01 | 77.2% | 78.7% |
| 2jqjA01 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.52 | 32.0 | 2.92e-01 | 87.0% | 43.8% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 34.0 | 3.71e-01 | 87.0% | 82.4% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 38.0 | 4.27e-01 | 94.6% | 100.0% |
| 1cx8A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.52 | 44.0 | 3.11e-01 | 95.7% | 39.4% |
| 1s3rA02 | 3.30.1040.20 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › | 0.51 | 23.0 | 2.91e-01 | 88.0% | 69.8% |
| 4oxwA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 45.0 | 4.30e-01 | 98.9% | 86.8% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5042975 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.70 | 37.0 | 2.87e-01 | 82.6% | 24.1% |
| 3645375 | 386.1.1.117 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 | 0.70 | 36.0 | 3.66e-01 | 91.3% | 48.9% |
| 139759 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.64 | 41.0 | 3.84e-01 | 92.4% | 52.2% |
| 3701008 | 11.1.4.16 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › EMC7_beta-sandw | 0.64 | 39.0 | 3.44e-01 | 97.8% | 41.5% |
| 5048974 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 34.0 | 3.22e-01 | 90.2% | 42.7% |
| 4982570 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.63 | 30.0 | 3.39e-01 | 71.7% | 57.1% |
| 3607882 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.62 | 44.0 | 4.20e-01 | 100.0% | 62.7% |
| 3739342 | 3722.1.1.1 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 | 0.62 | 51.0 | 3.49e-01 | 87.0% | 41.4% |
| 3484671 | 3433.1.1.0 ↗ | a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain | 0.62 | 28.0 | 3.57e-01 | 71.7% | 74.0% |
| 3557240 | 3722.1.1.1 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 | 0.61 | 51.0 | 3.44e-01 | 87.0% | 27.3% |
| 3898198 | 220.1.1.184 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP | 0.61 | 43.0 | 3.91e-01 | 97.8% | 54.4% |
| 4797813 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.60 | 29.0 | 3.45e-01 | 72.8% | 68.4% |
| 5041360 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.60 | 44.0 | 3.34e-01 | 78.3% | 90.8% |
| 3586665 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.59 | 34.0 | 4.15e-01 | 98.9% | 92.7% |
| 3891450 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.59 | 43.0 | 3.60e-01 | 77.2% | 88.7% |
| 3391411 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 28.0 | 3.80e-01 | 71.7% | 97.5% |
| 4524698 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.59 | 29.0 | 3.31e-01 | 71.7% | 61.5% |
| 5072187 | 321.1.1.7 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 | 0.59 | 52.0 | 3.36e-01 | 100.0% | 68.9% |
| 3612009 | 230.4.1.1 ↗ | a+b two layers › T-fold › ApbE-like › ApbE-like › ApbE | 0.58 | 39.0 | 3.02e-01 | 88.0% | 31.5% |
| 3730549 | 3722.1.1.1 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 | 0.58 | 50.0 | 3.37e-01 | 93.5% | 32.8% |
| 4929236 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.57 | 28.0 | 3.14e-01 | 71.7% | 57.1% |
| 3572103 | 220.1.1.74 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H | 0.57 | 39.0 | 3.46e-01 | 95.7% | 48.1% |
| 3405170 | 375.1.1.257 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Cuticle_3 | 0.55 | 24.0 | 3.29e-01 | 70.7% | 87.5% |
| 3249895 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.54 | 28.0 | 3.15e-01 | 71.7% | 62.9% |
| 3167073 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.54 | 44.0 | 3.73e-01 | 90.2% | 65.6% |
| 3438132 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 39.0 | 3.80e-01 | 94.6% | 67.6% |
| 4944756 | 3604.1.1.0 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain | 0.54 | 27.0 | 3.17e-01 | 70.7% | 68.3% |
| 4935912 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.54 | 27.0 | 3.06e-01 | 71.7% | 60.0% |
| 3257603 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.54 | 47.0 | 4.34e-01 | 100.0% | 75.0% |
| 3889863 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.53 | 45.0 | 4.20e-01 | 95.7% | 85.0% |
| 5029482 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.52 | 39.0 | 4.13e-01 | 98.9% | 91.3% |
| 3478366 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.51 | 42.0 | 4.06e-01 | 92.4% | 80.0% |
| 4405445 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 27.0 | 2.99e-01 | 79.3% | 62.9% |
| 4972532 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.50 | 35.0 | 3.61e-01 | 71.7% | 95.6% |
| 5005640 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.50 | 28.0 | 3.15e-01 | 77.2% | 72.3% |