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MF959998.1__ATN93258.1__X__00020
Bact-VirMF959998.1__ATN93258.1__X__00020
Identity
- Accession:
- MF959998 ↗
- Kingdom:
- phage
Quality
65.6
mean pLDDT
Taxonomy
TaxID: 2041342
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 169-222
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.79 | 70.0 | 5.91e-01 | 100.0% | 67.4% |
| 2yqzA02 | 1.10.8.900 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.72 | 52.0 | 4.91e-01 | 79.6% | 88.2% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.71 | 62.0 | 5.87e-01 | 100.0% | 89.4% |
| 2ah5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.71 | 54.0 | 5.09e-01 | 83.3% | 93.8% |
| 3rguB00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.70 | 60.0 | 5.22e-01 | 100.0% | 87.4% |
| 2rp5A00 | 1.10.150.830 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.68 | 48.0 | 3.73e-01 | 74.1% | 57.3% |
| 2hn1A02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.68 | 41.0 | 3.29e-01 | 70.4% | 31.7% |
| 2qnlA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.65 | 57.0 | 4.08e-01 | 100.0% | 36.4% |
| 3d1bB00 | 1.20.920.40 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.65 | 50.0 | 4.09e-01 | 100.0% | 43.5% |
| 2m6uA00 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.64 | 56.0 | 4.91e-01 | 100.0% | 89.0% |
| 3ed5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.63 | 46.0 | 4.10e-01 | 81.5% | 96.4% |
| 3gruA02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.62 | 52.0 | 4.57e-01 | 100.0% | 90.7% |
| 2yy5A02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.60 | 49.0 | 4.00e-01 | 100.0% | 45.4% |
| 2p11A02 | 1.10.286.50 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.58 | 51.0 | 4.61e-01 | 98.1% | 78.4% |
| 4ielA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 40.0 | 3.16e-01 | 74.1% | 47.4% |
| 3mhsB00 | 1.10.246.140 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 | 0.58 | 43.0 | 3.70e-01 | 83.3% | 52.7% |
| 2z3xA00 | 6.10.10.80 | Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Small, acid-soluble spore protein, alpha/beta type-like | 0.57 | 44.0 | 4.44e-01 | 90.7% | 91.1% |
| 1txuA02 | 1.20.1050.80 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › VPS9 domain | 0.55 | 46.0 | 3.39e-01 | 100.0% | 93.1% |
| 4ad9A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 36.0 | 3.12e-01 | 70.4% | 54.8% |
| 1irxA04 | 1.10.10.770 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.50 | 40.0 | 3.20e-01 | 87.0% | 44.4% |
| 4f0cA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.50 | 44.0 | 3.30e-01 | 100.0% | 56.5% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3589701 | 632.24.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › GBS CAMP factor C-terminal domain › GBS CAMP factor C-terminal domain › ORF6C | 0.75 | 66.0 | 5.71e-01 | 100.0% | 81.2% |
| 4010451 | 3788.1.1.15 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › PF27202 | 0.75 | 65.0 | 5.90e-01 | 100.0% | 77.3% |
| 3711337 | 632.24.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › GBS CAMP factor C-terminal domain › GBS CAMP factor C-terminal domain | 0.69 | 60.0 | 5.73e-01 | 100.0% | 93.8% |
| 2507424 | 6091.1.1.1 ↗ | alpha bundles › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › FIVAR | 0.69 | 61.0 | 5.24e-01 | 100.0% | 87.1% |
| 3617518 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.64 | 54.0 | 5.07e-01 | 100.0% | 81.4% |
| 3999074 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.63 | 44.0 | 4.42e-01 | 75.9% | 78.2% |
| 3979831 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.62 | 50.0 | 4.74e-01 | 100.0% | 76.9% |
| 3353941 | 1134.1.1.7 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › ALA1 | 0.62 | 39.0 | 3.75e-01 | 74.1% | 52.3% |
| 3812006 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.61 | 48.0 | 2.99e-01 | 83.3% | 25.2% |
| 5029040 | 212.1.1.60 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Nre_N | 0.61 | 51.0 | 3.42e-01 | 100.0% | 42.9% |
| 3206816 | 633.6.1.0 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like | 0.60 | 50.0 | 3.62e-01 | 100.0% | 99.4% |
| 5037239 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.59 | 50.0 | 4.77e-01 | 98.1% | 87.7% |
| 3813837 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.59 | 40.0 | 3.63e-01 | 72.2% | 80.0% |
| 4629230 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.59 | 47.0 | 4.56e-01 | 98.1% | 86.2% |
| 3170904 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.57 | 45.0 | 4.06e-01 | 87.0% | 88.0% |
| 3455776 | 109.23.1.4 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal domain in vacuolar protein sorting-associated protein 54 › C-terminal domain in vacuolar protein sorting-associated protein 54 › TPR_PATROL1 | 0.56 | 40.0 | 3.71e-01 | 79.6% | 57.3% |
| 4522200 | 3684.1.1.1 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › DUF615 | 0.55 | 47.0 | 4.14e-01 | 100.0% | 78.8% |
| 3675882 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.55 | 33.0 | 2.26e-01 | 74.1% | 14.9% |
| 3220017 | 174.1.1.13 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF2700 | 0.54 | 46.0 | 3.43e-01 | 100.0% | 47.6% |
| 4666538 | 5060.2.1.0 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain | 0.53 | 44.0 | 3.50e-01 | 100.0% | 78.4% |
| 5054410 | 102.3.1.0 ↗ | alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain | 0.52 | 44.0 | 3.80e-01 | 96.3% | 77.6% |
| 3272839 | 3352.1.1.16 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › ALG3 | 0.51 | 39.0 | 2.42e-01 | 83.3% | 36.4% |
D2
medium
residues 69-122
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ht1A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.66 | 51.0 | 3.83e-01 | 87.0% | 55.6% |
| 2da3A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 41.0 | 4.38e-01 | 79.6% | 76.6% |
| 5e50A01 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.62 | 42.0 | 3.57e-01 | 74.1% | 41.0% |
| 4j7hA02 | 3.90.79.40 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › EvaA sugar 2,3-dehydratase subunit | 0.61 | 50.0 | 3.65e-01 | 94.4% | 75.2% |
| 1nz8A00 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.61 | 46.0 | 3.71e-01 | 87.0% | 99.2% |
| 2k2dA00 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.60 | 40.0 | 4.26e-01 | 70.4% | 87.2% |
| 1adnA00 | 3.40.10.10 | Alpha Beta › 3-Layer(aba) Sandwich › DNA Methylphosphotriester Repair Domain › DNA Methylphosphotriester Repair Domain | 0.59 | 50.0 | 4.25e-01 | 98.1% | 64.1% |
| 5ja1B00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.58 | 43.0 | 4.12e-01 | 83.3% | 75.8% |
| 4gr5C01 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.58 | 44.0 | 4.21e-01 | 85.2% | 78.1% |
| 1f94A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.58 | 40.0 | 3.85e-01 | 74.1% | 69.8% |
| 1aunA00 | 2.60.110.10 | Mainly Beta › Sandwich › Thaumatin › Thaumatin | 0.57 | 48.0 | 3.29e-01 | 100.0% | 31.7% |
| 1txqA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.57 | 38.0 | 3.48e-01 | 70.4% | 97.3% |
| 3rnvA00 | 3.90.70.150 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Helper component proteinase | 0.55 | 46.0 | 3.56e-01 | 94.4% | 44.7% |
| 1lkxC03 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.55 | 37.0 | 2.93e-01 | 98.1% | 35.5% |
| 4bwiB01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.54 | 37.0 | 2.63e-01 | 72.2% | 68.8% |
| 4me3A03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.53 | 42.0 | 4.26e-01 | 88.9% | 94.5% |
| 1gh9A00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.53 | 39.0 | 3.61e-01 | 81.5% | 80.3% |
| 3k2nA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.53 | 36.0 | 2.59e-01 | 72.2% | 68.9% |
| 4kktA01 | 2.40.420.20 | Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › | 0.53 | 45.0 | 3.78e-01 | 100.0% | 69.8% |
| 2pf5D00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.52 | 37.0 | 3.20e-01 | 79.6% | 94.8% |
| 1bohA02 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.51 | 34.0 | 2.68e-01 | 70.4% | 80.9% |
| 3bs3A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.51 | 41.0 | 4.03e-01 | 88.9% | 98.3% |
| 1lliA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.50 | 42.0 | 3.64e-01 | 96.3% | 77.5% |
| 3pcoB05 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.50 | 38.0 | 2.63e-01 | 85.2% | 85.6% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3593793 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.69 | 47.0 | 4.93e-01 | 72.2% | 78.0% |
| 2640865 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 45.0 | 4.50e-01 | 70.4% | 92.7% |
| 3958167 | 901.1.1.0 ↗ | few secondary structure elements › ADA_N-like domain › ADA_N-like domain › ADA_N-like domain | 0.62 | 53.0 | 4.89e-01 | 98.1% | 87.1% |
| 3385112 | 4309.1.1.0 ↗ | a+b complex topology › DUSP, domain in ubiquitin-specific proteases › DUSP, domain in ubiquitin-specific proteases › DUSP, domain in ubiquitin-specific proteases | 0.60 | 50.0 | 3.82e-01 | 94.4% | 70.7% |
| 3289933 | 901.1.1.1 ↗ | few secondary structure elements › ADA_N-like domain › ADA_N-like domain › ADA_N-like domain › Ada_Zn_binding | 0.60 | 50.0 | 4.79e-01 | 96.3% | 92.3% |
| 3783961 | 901.1.1.1 ↗ | few secondary structure elements › ADA_N-like domain › ADA_N-like domain › ADA_N-like domain › Ada_Zn_binding | 0.60 | 50.0 | 4.63e-01 | 96.3% | 88.6% |
| 4992429 | 375.12.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Nicotinate phosphoribosyltransferase C-terminal domain-related › Nicotinate phosphoribosyltransferase C-terminal domain-related | 0.57 | 43.0 | 3.48e-01 | 79.6% | 63.0% |
| 3235447 | 821.1.1.8 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › ANKLE2_3rd | 0.56 | 46.0 | 3.91e-01 | 90.7% | 84.4% |
| 3951302 | 4076.2.1.0 ↗ | a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like | 0.56 | 48.0 | 3.53e-01 | 100.0% | 52.7% |
| 4675823 | 377.1.1.3 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TK | 0.55 | 39.0 | 3.76e-01 | 77.8% | 64.6% |
| 5059159 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.54 | 41.0 | 3.34e-01 | 87.0% | 54.9% |
| 5036474 | 375.12.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Nicotinate phosphoribosyltransferase C-terminal domain-related › Nicotinate phosphoribosyltransferase C-terminal domain-related › NAPRTase_C | 0.54 | 45.0 | 3.78e-01 | 94.4% | 73.7% |
| 3579071 | 70.3.1.5 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › PRDM2_PR | 0.53 | 43.0 | 2.92e-01 | 94.4% | 32.3% |
| 3308035 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.53 | 36.0 | 2.84e-01 | 74.1% | 75.7% |
| 3730850 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.53 | 42.0 | 3.09e-01 | 96.3% | 88.6% |
| 3249589 | 904.1.1.1 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box | 0.52 | 37.0 | 2.71e-01 | 87.0% | 23.2% |
| 3214804 | 384.1.1.1 ↗ | few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI | 0.51 | 37.0 | 3.57e-01 | 81.5% | 78.5% |
| 3995853 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.51 | 35.0 | 2.16e-01 | 70.4% | 31.8% |
| 3715664 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.50 | 37.0 | 2.88e-01 | 81.5% | 75.4% |