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MF959998.1__ATN93272.1__X__00034

Bact-Vir

MF959998.1__ATN93272.1__X__00034

Identity

Accession:
MF959998 ↗
Kingdom:
phage

Quality

88.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casjensviridae› Marinobacter_phage_PS6

TaxID: 2041342

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-49
PDB
Domain cluster: rep: PH2015_14_scaffold_1_prodigal-single.1__X__X__00101__D6-50
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2esbA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.81 58.0 3.86e-01 86.7% 21.0%
2rhcA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.79 65.0 3.95e-01 100.0% 15.6%
1yn9B00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.78 58.0 3.85e-01 95.6% 21.3%
3hc1A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.75 57.0 3.39e-01 88.9% 12.4%
1zx3A01 1.10.287.1020 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › NE0241-like 0.74 51.0 4.13e-01 73.3% 38.8%
2is6A04 1.10.486.10 Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 0.70 57.0 3.83e-01 88.9% 26.7%
1wudA00 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.69 50.0 4.17e-01 77.8% 62.3%
4ivnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 56.0 4.67e-01 100.0% 69.7%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.61 41.0 3.68e-01 73.3% 64.8%
1u8bA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 44.0 4.04e-01 95.6% 83.6%
2jvwA01 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.52 39.0 3.70e-01 100.0% 68.3%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5067590 103.12.1.14 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › DUF2240 0.87 67.0 6.48e-01 82.2% 74.0%
3873737 103.1.1.143 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_ARIH2_N 0.86 60.0 5.39e-01 73.3% 85.0%
5032962 103.12.1.14 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › DUF2240 0.86 66.0 5.79e-01 82.2% 57.8%
3522732 103.1.1.143 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_ARIH2_N 0.85 59.0 5.00e-01 73.3% 72.9%
4010634 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.84 56.0 5.41e-01 82.2% 62.0%
4978168 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.84 60.0 4.15e-01 75.6% 26.1%
5080761 103.12.1.14 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › DUF2240 0.83 64.0 5.61e-01 82.2% 57.8%
4598951 1112.1.1.0 ↗ alpha arrays › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain 0.83 59.0 5.73e-01 82.2% 68.0%
3959245 103.12.1.1 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR 0.82 64.0 5.02e-01 84.4% 43.5%
4033200 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.81 59.0 5.95e-01 84.4% 77.8%
5022243 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.81 63.0 4.32e-01 88.9% 26.2%
4860742 1112.1.1.0 ↗ alpha arrays › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain › MshE c-di-GMP-binding domain 0.78 52.0 4.84e-01 86.7% 55.2%
3480122 2007.2.3.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.72 53.0 3.80e-01 95.6% 26.7%
4266784 2004.1.1.455 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, UvrD_C, UvrD_C_2 0.71 53.0 2.94e-01 82.2% 6.7%
3357244 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.70 55.0 4.17e-01 97.8% 37.1%
3973110 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.70 57.0 3.53e-01 93.3% 26.1%
5011866 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.69 58.0 3.69e-01 97.8% 29.4%
3245973 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.69 53.0 3.10e-01 93.3% 9.3%
3284349 101.1.2.735 ↗ alpha arrays › HTH › HTH › winged helix domain › PspC 0.67 53.0 4.37e-01 91.1% 82.4%
3944461 2003.1.1.69 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 0.66 53.0 3.41e-01 100.0% 17.1%
4342754 2003.1.1.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.66 53.0 3.43e-01 100.0% 17.6%
5024512 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 45.0 4.41e-01 88.9% 68.0%
3940380 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.60 46.0 4.41e-01 95.6% 72.7%
3587165 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 45.0 4.25e-01 88.9% 74.5%
3609939 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.55 46.0 3.59e-01 97.8% 64.8%
3994346 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.51 35.0 3.46e-01 100.0% 67.3%