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MF959998.1__ATN93298.1__X__00060
Bact-VirMF959998.1__ATN93298.1__X__00060
Identity
- Accession:
- MF959998 ↗
- Kingdom:
- phage
Quality
75.3
mean pLDDT
Taxonomy
TaxID: 2041342
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-59
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gvpA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.74 | 52.0 | 3.52e-01 | 75.0% | 22.8% |
| 2llkA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 50.0 | 5.68e-01 | 83.9% | 100.0% |
| 1p4wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 50.0 | 4.38e-01 | 75.0% | 54.0% |
| 1u8bA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.69 | 58.0 | 5.65e-01 | 100.0% | 85.2% |
| 2wteA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 54.0 | 4.96e-01 | 98.2% | 68.1% |
| 2m8gX00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.67 | 50.0 | 4.70e-01 | 91.1% | 65.7% |
| 1a9xA04 | 1.10.1030.10 | Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain | 0.66 | 55.0 | 4.08e-01 | 94.6% | 44.7% |
| 1umqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 49.0 | 4.83e-01 | 89.3% | 75.0% |
| 2w7nA00 | 1.10.10.2690 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.65 | 45.0 | 3.81e-01 | 87.5% | 43.6% |
| 1r71A01 | 1.10.10.730 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain | 0.64 | 51.0 | 5.16e-01 | 87.5% | 89.3% |
| 5dukB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 52.0 | 4.98e-01 | 98.2% | 77.6% |
| 2lvsA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.62 | 46.0 | 4.67e-01 | 92.9% | 83.9% |
| 5cvrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 54.0 | 4.77e-01 | 100.0% | 76.2% |
| 3onqA03 | 1.10.10.2840 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain | 0.62 | 50.0 | 3.84e-01 | 92.9% | 38.9% |
| 4bxoA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.61 | 45.0 | 4.36e-01 | 98.2% | 70.1% |
| 1hw1A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 53.0 | 4.87e-01 | 100.0% | 82.7% |
| 2r0qC02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.60 | 47.0 | 4.75e-01 | 96.4% | 92.7% |
| 2o3fA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 50.0 | 4.50e-01 | 100.0% | 67.1% |
| 3py8A04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.58 | 48.0 | 3.72e-01 | 98.2% | 72.2% |
| 4x0qA04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.57 | 48.0 | 3.66e-01 | 98.2% | 72.9% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3967284 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.79 | 59.0 | 5.84e-01 | 92.9% | 75.0% |
| 3987778 | 101.1.1.118 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_IS630 | 0.77 | 59.0 | 5.96e-01 | 98.2% | 83.6% |
| 4031535 | 101.1.1.275 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › GerE | 0.76 | 51.0 | 5.01e-01 | 71.4% | 65.0% |
| 5071071 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 59.0 | 5.48e-01 | 85.7% | 71.4% |
| 5014241 | 101.1.1.371 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 | 0.74 | 58.0 | 5.09e-01 | 85.7% | 57.6% |
| 4596898 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.74 | 52.0 | 4.68e-01 | 75.0% | 53.8% |
| 5004840 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 55.0 | 4.97e-01 | 96.4% | 57.5% |
| 3290024 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.74 | 52.0 | 4.64e-01 | 75.0% | 57.5% |
| 3930711 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 53.0 | 5.80e-01 | 92.9% | 95.6% |
| 3988327 | 101.1.1.118 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_IS630 | 0.73 | 57.0 | 5.82e-01 | 100.0% | 87.3% |
| 5078267 | 101.1.2.881 ↗ | alpha arrays › HTH › HTH › winged helix domain › UPF0175 | 0.73 | 58.0 | 5.24e-01 | 96.4% | 64.0% |
| 4971448 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.73 | 56.0 | 5.06e-01 | 92.9% | 61.3% |
| 3923654 | 101.1.1.356 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_11 | 0.73 | 58.0 | 5.74e-01 | 98.2% | 81.7% |
| 4952035 | 101.1.1.17 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 | 0.72 | 56.0 | 5.51e-01 | 100.0% | 80.0% |
| 5006645 | 101.1.1.63 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 | 0.72 | 51.0 | 5.08e-01 | 92.9% | 71.7% |
| 3879118 | 101.1.1.60 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 | 0.72 | 52.0 | 5.28e-01 | 94.6% | 78.2% |
| 4989022 | 101.1.2.881 ↗ | alpha arrays › HTH › HTH › winged helix domain › UPF0175 | 0.72 | 52.0 | 5.66e-01 | 91.1% | 97.8% |
| 4987653 | 101.1.2.139 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_23 | 0.72 | 50.0 | 5.45e-01 | 92.9% | 91.1% |
| 4162857 | 101.1.1.17 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 | 0.72 | 51.0 | 5.35e-01 | 92.9% | 84.0% |
| 3168868 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 54.0 | 5.58e-01 | 100.0% | 94.0% |
| 4350602 | 101.1.8.14 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › UPF0175 | 0.71 | 55.0 | 5.31e-01 | 91.1% | 73.8% |
| 4654073 | 101.1.1.371 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 | 0.70 | 55.0 | 5.06e-01 | 94.6% | 65.3% |
| 3929142 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 56.0 | 5.54e-01 | 100.0% | 83.3% |
| 5064868 | 101.1.11.203 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 | 0.70 | 55.0 | 4.77e-01 | 91.1% | 54.4% |
| 5050966 | 101.1.11.2 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 | 0.70 | 55.0 | 4.66e-01 | 94.6% | 51.6% |
| 5029686 | 101.1.11.203 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 | 0.70 | 55.0 | 5.00e-01 | 89.3% | 64.0% |
| 4992849 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.70 | 53.0 | 4.77e-01 | 87.5% | 58.7% |
| 4054648 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 51.0 | 5.17e-01 | 92.9% | 80.0% |
| 4966880 | 101.1.11.203 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 | 0.69 | 55.0 | 4.64e-01 | 94.6% | 51.6% |
| 4992527 | 101.1.11.203 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 | 0.69 | 53.0 | 4.72e-01 | 87.5% | 58.7% |
| 4987329 | 101.1.2.881 ↗ | alpha arrays › HTH › HTH › winged helix domain › UPF0175 | 0.68 | 54.0 | 4.74e-01 | 96.4% | 57.6% |
| 4950777 | 101.1.1.371 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 | 0.68 | 53.0 | 5.00e-01 | 91.1% | 70.0% |
| 3280565 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 55.0 | 5.74e-01 | 100.0% | 100.0% |
| 4530329 | 101.1.8.14 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › UPF0175 | 0.67 | 52.0 | 5.18e-01 | 91.1% | 81.7% |
| 5045749 | 101.1.11.203 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 | 0.66 | 51.0 | 4.94e-01 | 91.1% | 73.8% |
| 4674817 | 101.1.1.31 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 | 0.65 | 54.0 | 3.82e-01 | 94.6% | 29.7% |
| 3933366 | 101.1.6.12 ↗ | alpha arrays › HTH › HTH › TrpR › HTH_23 | 0.64 | 54.0 | 5.09e-01 | 100.0% | 77.1% |
| 4943227 | 101.1.1.63 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 | 0.62 | 44.0 | 4.74e-01 | 91.1% | 95.6% |
| 5043001 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.58 | 50.0 | 4.08e-01 | 98.2% | 55.2% |
D2
high
residues 88-147
Domain cluster:
rep: NC_002362.1__NP_059538.1__VfO3K6p08__00008__D175-228
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1r69A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.69 | 45.0 | 4.42e-01 | 70.0% | 63.5% |
| 2hivA01 | 1.10.3260.10 | Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain | 0.68 | 50.0 | 3.37e-01 | 78.3% | 78.4% |
| 1tr8A02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.67 | 42.0 | 4.77e-01 | 70.0% | 97.4% |
| 2l3nA00 | 1.10.1050.20 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S4 Delta 41; Chain A, domain 1 › | 0.66 | 43.0 | 3.65e-01 | 75.0% | 39.4% |
| 3fyaB00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.63 | 43.0 | 3.93e-01 | 70.0% | 54.5% |
| 3bs3A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.62 | 41.0 | 4.17e-01 | 70.0% | 66.7% |
| 2aplA01 | 1.10.8.330 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like | 0.59 | 42.0 | 4.10e-01 | 76.7% | 100.0% |
| 3mopA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.56 | 38.0 | 3.24e-01 | 70.0% | 42.9% |
| 2kvvA00 | 1.10.1660.60 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Putative excisionased domain DUF1233 | 0.54 | 44.0 | 4.07e-01 | 91.7% | 92.3% |
| 5yc9B01 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.54 | 42.0 | 3.67e-01 | 88.3% | 63.9% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4982623 | 4095.1.1.1 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N | 0.70 | 44.0 | 4.04e-01 | 71.7% | 47.5% |
| 4973623 | 4095.1.1.0 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain | 0.69 | 51.0 | 3.43e-01 | 78.3% | 79.5% |
| 5046138 | 4095.1.1.1 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N | 0.68 | 45.0 | 3.03e-01 | 73.3% | 18.6% |
| 3983963 | 101.1.9.41 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › ORF6N | 0.68 | 48.0 | 3.93e-01 | 73.3% | 83.8% |
| 3232962 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.62 | 43.0 | 4.40e-01 | 73.3% | 78.3% |
| 5047478 | 6058.1.1.1 ↗ | alpha arrays › C-terminal alpha domain in Alpha-Glycerophosphate Oxidase › C-terminal alpha domain in Alpha-Glycerophosphate Oxidase › C-terminal alpha domain in Alpha-Glycerophosphate Oxidase › DAO_C | 0.60 | 52.0 | 4.14e-01 | 100.0% | 87.7% |
| 5031913 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.54 | 45.0 | 3.89e-01 | 88.3% | 61.1% |
| 4034522 | 857.1.1.2 ↗ | a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › PVL_ORF50 | 0.53 | 39.0 | 3.45e-01 | 96.7% | 51.6% |