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MF959999.1__ATN93323.1__X__00005

Bact-Vir

MF959999.1__ATN93323.1__X__00005

Identity

Accession:
MF959999 ↗
Kingdom:
phage

Quality

90.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-84
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ci6B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.73 59.0 4.37e-01 87.7% 61.8%
1j75A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 55.0 5.88e-01 98.5% 96.5%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.69 55.0 3.97e-01 87.7% 67.9%
3dp7B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 55.0 4.89e-01 100.0% 61.3%
7bqjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 4.91e-01 100.0% 70.4%
1mc0A01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.66 52.0 3.95e-01 87.7% 63.3%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.65 56.0 4.70e-01 100.0% 57.6%
4o5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 53.0 5.23e-01 100.0% 83.1%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 53.0 5.10e-01 100.0% 79.5%
3oovA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.64 50.0 3.82e-01 87.7% 60.4%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.64 48.0 3.81e-01 81.5% 72.1%
1cf7A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 5.06e-01 98.5% 85.1%
4p9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 50.0 4.98e-01 100.0% 85.1%
2m45A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 53.0 4.80e-01 98.5% 71.3%
3d6wB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 53.0 5.21e-01 100.0% 94.3%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 51.0 4.40e-01 100.0% 98.2%
4jqfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 53.0 5.09e-01 98.5% 94.5%
3tqnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 4.78e-01 100.0% 80.8%
3c7jA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 48.0 4.32e-01 100.0% 63.7%
3k2nA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.59 45.0 3.42e-01 87.7% 59.3%
1wv8A00 3.30.2390.10 Alpha Beta › 2-Layer Sandwich › TTHA1013/TTHA0281-like › TTHA1013-like 0.58 42.0 4.11e-01 76.9% 94.4%
3dpuA03 1.10.10.2200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.58 49.0 4.70e-01 100.0% 82.7%
2ma3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 50.0 4.56e-01 98.5% 72.7%
4esjA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 50.0 4.50e-01 98.5% 70.0%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 4.57e-01 100.0% 79.5%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 50.0 4.63e-01 100.0% 79.8%
2enpA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.57 44.0 3.50e-01 87.7% 84.4%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 44.0 3.85e-01 87.7% 84.6%
1ft9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 49.0 4.65e-01 100.0% 83.5%
1zybA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 47.0 3.30e-01 100.0% 28.3%
2qenA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 4.43e-01 100.0% 88.6%
2zzzA02 3.30.63.10 Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › Guanylate Kinase phosphate binding domain 0.56 42.0 4.32e-01 83.1% 88.3%
4bbyA02 3.30.160.650 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 35.0 3.93e-01 72.3% 97.7%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 49.0 4.20e-01 100.0% 68.0%
3lm7A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 41.0 2.85e-01 83.1% 38.2%
2yx6D01 3.30.420.130 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain 0.54 41.0 3.65e-01 84.6% 79.4%
4yo2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 4.32e-01 100.0% 87.3%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 46.0 4.31e-01 100.0% 81.2%
4ebgA00 3.10.450.560 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 38.0 3.39e-01 80.0% 56.7%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.52 36.0 3.44e-01 73.8% 79.7%
1w4tA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.51 36.0 3.25e-01 76.9% 91.9%
1qmoE01 2.60.40.4220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 35.0 3.25e-01 70.8% 94.0%
1pvgA01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.51 42.0 2.97e-01 98.5% 74.6%
1maiA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.64e-01 100.0% 74.8%
1xr0B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.93e-01 100.0% 78.0%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 44.0 4.16e-01 100.0% 80.5%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589643 101.1.2.279 alpha arrays › HTH › HTH › winged helix domain › AbiEi_4 0.76 53.0 5.91e-01 98.5% 94.0%
3946906 101.1.2.683 alpha arrays › HTH › HTH › winged helix domain › AbiEi_3_N 0.74 52.0 5.79e-01 98.5% 98.0%
3434585 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.73 58.0 3.76e-01 87.7% 39.0%
4192664 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.70 56.0 3.56e-01 87.7% 37.7%
4981109 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 54.0 5.75e-01 100.0% 100.0%
1385077 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.69 55.0 4.05e-01 87.7% 73.4%
4997938 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 53.0 5.71e-01 100.0% 100.0%
5063319 101.1.2.279 alpha arrays › HTH › HTH › winged helix domain › AbiEi_4 0.69 51.0 5.48e-01 100.0% 94.5%
4503143 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.67 55.0 3.36e-01 100.0% 14.7%
5075049 105.2.1.0 alpha duplicates or obligate multimers › HLH-like › Dimerization domain in LRIM1/APL1C › Dimerization domain in LRIM1/APL1C 0.67 54.0 4.01e-01 100.0% 34.5%
3965146 101.1.2.162 alpha arrays › HTH › HTH › winged helix domain › DprA_WH 0.67 51.0 5.18e-01 100.0% 83.1%
4927755 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 51.0 5.52e-01 100.0% 98.2%
4667565 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.66 52.0 4.02e-01 100.0% 38.0%
5075188 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 54.0 5.17e-01 100.0% 78.4%
4969799 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 53.0 5.14e-01 100.0% 79.5%
136833 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.65 51.0 3.76e-01 87.7% 53.2%
4984750 101.1.2.279 alpha arrays › HTH › HTH › winged helix domain › AbiEi_4 0.65 50.0 5.37e-01 100.0% 98.2%
5002126 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 52.0 5.46e-01 98.5% 98.3%
3948293 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.65 51.0 3.91e-01 87.7% 61.3%
4927436 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 52.0 4.40e-01 100.0% 52.7%
3442609 387.1.1.0 few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.64 45.0 4.71e-01 75.4% 93.3%
4930015 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 55.0 4.50e-01 100.0% 53.0%
2983288 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 44.0 4.03e-01 73.8% 79.8%
3392391 101.1.2.397 alpha arrays › HTH › HTH › winged helix domain › WHD_MCM8 0.63 53.0 5.08e-01 100.0% 80.0%
4992875 101.1.2.279 alpha arrays › HTH › HTH › winged helix domain › AbiEi_4 0.63 52.0 4.95e-01 100.0% 78.7%
5052149 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.63 54.0 4.87e-01 100.0% 68.9%
5030366 101.1.2.181 alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.63 53.0 4.96e-01 100.0% 75.0%
4959373 223.1.1.23 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.63 50.0 3.78e-01 89.2% 66.1%
5031834 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 51.0 4.62e-01 100.0% 65.6%
4022776 880.1.1.1 a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.62 48.0 2.90e-01 86.2% 72.8%
4227814 101.1.2.546 alpha arrays › HTH › HTH › winged helix domain › Methyltransf_2 0.62 52.0 3.20e-01 100.0% 15.4%
3880184 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 48.0 3.49e-01 87.7% 48.5%
5042147 101.1.2.181 alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.62 53.0 5.01e-01 100.0% 78.8%
3382056 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 52.0 3.11e-01 100.0% 13.6%
4028997 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 47.0 4.28e-01 86.2% 87.8%
3512923 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.60 49.0 3.84e-01 89.2% 58.6%
3772634 101.1.2.397 alpha arrays › HTH › HTH › winged helix domain › WHD_MCM8 0.60 50.0 4.74e-01 100.0% 76.2%
4950413 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 51.0 4.85e-01 100.0% 79.7%
4024504 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 48.0 4.23e-01 92.3% 89.0%
3809440 226.1.1.20 a+b two layers › POZ domain › POZ domain › POZ domain › PF30468, PF30469 0.59 46.0 3.79e-01 87.7% 47.2%
5083436 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 49.0 4.10e-01 100.0% 53.0%
4967393 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 52.0 5.09e-01 100.0% 92.9%
4968456 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 52.0 4.97e-01 100.0% 92.0%
3405548 10.32.1.21 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PAW 0.58 49.0 3.76e-01 100.0% 97.6%
3830447 101.1.2.397 alpha arrays › HTH › HTH › winged helix domain › WHD_MCM8 0.58 51.0 4.80e-01 100.0% 81.2%
3382115 226.1.1.20 a+b two layers › POZ domain › POZ domain › POZ domain › PF30468, PF30469 0.58 44.0 3.24e-01 84.6% 30.8%
1482328 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 50.0 4.56e-01 98.5% 72.7%
3802258 226.1.1.20 a+b two layers › POZ domain › POZ domain › POZ domain › PF30468, PF30469 0.58 45.0 3.39e-01 87.7% 85.9%
4650779 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.57 45.0 3.73e-01 87.7% 84.0%
5045142 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 49.0 4.65e-01 98.5% 80.8%
3432379 387.1.1.10 few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF 0.57 42.0 4.25e-01 80.0% 86.2%
3260943 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 43.0 4.26e-01 81.5% 98.6%
3988923 101.1.2.158 alpha arrays › HTH › HTH › winged helix domain › DpnI_C 0.57 50.0 4.83e-01 98.5% 86.5%
5040732 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 51.0 4.26e-01 100.0% 66.4%
5064032 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 48.0 4.78e-01 100.0% 91.4%
3424354 226.1.1.20 a+b two layers › POZ domain › POZ domain › POZ domain › PF30468, PF30469 0.56 42.0 3.08e-01 81.5% 88.4%
3228340 4075.1.1.2 a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.56 42.0 3.70e-01 83.1% 79.0%
3928430 4.1.1.223 beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.56 40.0 4.00e-01 84.6% 72.9%
3264756 4075.1.1.2 a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.54 40.0 3.55e-01 81.5% 75.0%
3733386 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 46.0 3.37e-01 100.0% 38.4%
136506 4075.1.1.2 a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.54 39.0 3.52e-01 81.5% 78.8%
3590981 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.53 46.0 4.33e-01 100.0% 84.8%
1697915 825.1.1.2 beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › ETX_MTX2 0.53 37.0 2.54e-01 73.8% 72.6%
4933497 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 42.0 3.71e-01 92.3% 74.3%
3930399 4075.1.1.0 a+b complex topology › RGC domain › RGC domain › RGC domain 0.52 38.0 3.42e-01 81.5% 77.8%
3497958 2.1.1.69 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI2 0.51 45.0 3.43e-01 100.0% 76.8%
3255777 4075.1.1.2 a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.51 38.0 3.49e-01 83.1% 78.9%
5022543 2002.1.1.36 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind 0.51 42.0 2.57e-01 98.5% 41.6%
4992358 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.50 43.0 3.47e-01 100.0% 77.0%