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MF975638.1__ATN93753.1__SEA_ABT2GRADUATEX2_14__00014
Bact-VirMF975638.1__ATN93753.1__SEA_ABT2GRADUATEX2_14__00014
Identity
- Accession:
- MF975638 ↗
- Kingdom:
- phage
Quality
88.5
mean pLDDT
Taxonomy
TaxID: 2041353
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-75
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lm9A00 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 46.0 | 4.17e-01 | 89.0% | 49.0% |
| 3ddmA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.72 | 57.0 | 4.80e-01 | 87.7% | 92.0% |
| 4a18O00 | 3.30.390.110 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.69 | 57.0 | 4.60e-01 | 89.0% | 53.7% |
| 1f68A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.68 | 52.0 | 4.65e-01 | 82.2% | 94.2% |
| 3cesA03 | 1.10.10.1800 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG/GidA | 0.68 | 50.0 | 4.68e-01 | 89.0% | 63.0% |
| 1dqeA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.67 | 41.0 | 3.31e-01 | 94.5% | 32.1% |
| 2gutA00 | 1.10.246.20 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain | 0.66 | 43.0 | 4.29e-01 | 93.2% | 63.6% |
| 4n4gA01 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.66 | 51.0 | 4.53e-01 | 86.3% | 85.6% |
| 1yeyA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.65 | 50.0 | 4.29e-01 | 84.9% | 99.2% |
| 2qddA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.65 | 51.0 | 4.22e-01 | 84.9% | 90.0% |
| 3wmeA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.65 | 52.0 | 3.35e-01 | 86.3% | 85.3% |
| 1u84A00 | 1.10.340.20 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain | 0.62 | 46.0 | 4.51e-01 | 79.5% | 98.8% |
| 3akjA02 | 1.10.1070.20 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › | 0.61 | 46.0 | 3.43e-01 | 82.2% | 78.1% |
| 7qocA01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.60 | 44.0 | 3.22e-01 | 76.7% | 89.8% |
| 1kxpD04 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.60 | 45.0 | 4.50e-01 | 100.0% | 77.9% |
| 5c8aA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.58 | 45.0 | 4.47e-01 | 84.9% | 100.0% |
| 5jrcA00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 46.0 | 3.44e-01 | 86.3% | 38.7% |
| 3g36B00 | 1.20.890.10 | Mainly Alpha › Up-down Bundle › cAMP-dependent Protein Kinase, Chain A › cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain | 0.58 | 34.0 | 3.86e-01 | 91.8% | 82.4% |
| 1nyaA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.57 | 45.0 | 3.39e-01 | 84.9% | 42.0% |
| 2j0nB00 | 1.20.1710.10 | Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like | 0.56 | 47.0 | 3.43e-01 | 90.4% | 70.1% |
| 2qyuA02 | 1.25.40.300 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein | 0.56 | 42.0 | 3.14e-01 | 82.2% | 34.9% |
| 3u9jA00 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.55 | 49.0 | 3.87e-01 | 100.0% | 72.0% |
| 3oo6A02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 45.0 | 3.25e-01 | 94.5% | 69.0% |
| 1dj8A00 | 1.10.890.10 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A | 0.53 | 34.0 | 3.35e-01 | 91.8% | 59.5% |
| 1np7A02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 45.0 | 3.90e-01 | 98.6% | 96.6% |
| 7px0A01 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.52 | 42.0 | 3.54e-01 | 86.3% | 69.2% |
| 1gvfB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 46.0 | 3.10e-01 | 98.6% | 85.1% |
| 1v37A00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.51 | 38.0 | 2.87e-01 | 79.5% | 69.6% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2474881 | 397.7.1.0 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 | 0.77 | 45.0 | 5.44e-01 | 89.0% | 91.5% |
| 3632120 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.77 | 60.0 | 5.89e-01 | 84.9% | 95.0% |
| 3933683 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.75 | 60.0 | 5.88e-01 | 86.3% | 91.3% |
| 4516064 | 4959.1.1.1 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 | 0.74 | 63.0 | 5.01e-01 | 95.9% | 98.0% |
| 4154251 | 3265.1.1.1 ↗ | alpha arrays › C-terminal helical domain in tRNA modifying enzyme GidA › C-terminal helical domain in tRNA modifying enzyme GidA › C-terminal helical domain in tRNA modifying enzyme GidA › GIDA_C_1st | 0.72 | 54.0 | 5.02e-01 | 89.0% | 64.4% |
| 3752375 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.71 | 51.0 | 3.70e-01 | 75.3% | 85.6% |
| 4929738 | 6049.1.1.0 ↗ | alpha bundles › PH0832-like › PH0832-like › PH0832-like | 0.70 | 52.0 | 5.22e-01 | 80.8% | 100.0% |
| 3830559 | 2488.1.1.18 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › DTW | 0.70 | 55.0 | 3.93e-01 | 84.9% | 92.8% |
| 3390973 | 592.1.1.1 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI | 0.69 | 60.0 | 5.20e-01 | 97.3% | 74.8% |
| 5073956 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.69 | 53.0 | 3.99e-01 | 82.2% | 86.3% |
| 4061592 | 109.4.1.218 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAP | 0.68 | 49.0 | 3.25e-01 | 75.3% | 29.8% |
| 3713912 | 633.21.1.22 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › COPI_assoc | 0.67 | 51.0 | 4.32e-01 | 80.8% | 94.2% |
| 4405002 | 109.4.1.218 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAP | 0.65 | 45.0 | 3.65e-01 | 74.0% | 59.5% |
| None | — | 0.65 | 45.0 | 3.06e-01 | 74.0% | 30.4% | |
| 3498792 | 189.1.1.2 ↗ | alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP | 0.64 | 44.0 | 3.02e-01 | 72.6% | 27.1% |
| 4622177 | 3804.1.1.1 ↗ | alpha bundles › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain › Cas13a_endoribonuclease | 0.62 | 49.0 | 3.62e-01 | 87.7% | 36.1% |
| 3595738 | 109.4.1.218 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAP | 0.62 | 43.0 | 3.53e-01 | 74.0% | 68.6% |
| 5040824 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.59 | 55.0 | 4.21e-01 | 100.0% | 59.7% |
| 4995044 | 1076.1.1.0 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related | 0.58 | 52.0 | 3.70e-01 | 100.0% | 95.5% |
| 4664275 | 5039.1.1.1 ↗ | alpha bundles › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › COX3 | 0.57 | 51.0 | 3.70e-01 | 100.0% | 58.5% |
| 3484695 | 7563.1.1.6 ↗ | a/b three-layered sandwiches › MCP/YpsA-related › MCP/YpsA-related › MCP/YpsA-related › LSDAT_euk | 0.53 | 43.0 | 2.86e-01 | 93.2% | 57.9% |
| 2388283 | 601.1.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin | 0.53 | 45.0 | 3.88e-01 | 100.0% | 91.2% |
| 3279482 | 2003.1.1.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NmrA | 0.51 | 41.0 | 2.74e-01 | 86.3% | 35.4% |