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MF975721.1__ATN93609.1__VW6B_5__00005

Bact-Vir

MF975721.1__ATN93609.1__VW6B_5__00005

Identity

Accession:
MF975721 ↗
Kingdom:
phage

Quality

88.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-76
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26843.1 best Kil_protein 72.5 2.90e-20 100.0% 70.3%
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2f20A00 3.90.1680.10 Alpha Beta › Alpha-Beta Complex › hypothetical protein yedk fold › SOS response associated peptidase-like 0.65 51.0 3.49e-01 98.1% 66.5%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.64 44.0 3.29e-01 71.2% 34.9%
3hi2B00 3.30.2310.40 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › 0.63 51.0 4.21e-01 90.4% 81.4%
1a94A00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.63 54.0 4.45e-01 100.0% 58.6%
2rk9B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.63 51.0 4.14e-01 100.0% 98.3%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.63 52.0 3.88e-01 100.0% 75.5%
1kw3B02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.61 45.0 3.30e-01 82.7% 35.7%
3f8uB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 48.0 3.74e-01 92.3% 85.5%
5gvcB01 3.40.50.140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 44.0 3.21e-01 84.6% 33.1%
4pavB00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 46.0 3.49e-01 90.4% 37.4%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.58 48.0 3.72e-01 94.2% 63.6%
2fclA00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.57 46.0 3.50e-01 100.0% 46.2%
1nlrA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.57 46.0 3.17e-01 100.0% 48.6%
4l0mA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.57 41.0 2.77e-01 80.8% 20.3%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 45.0 3.33e-01 92.3% 35.4%
4uuwA01 3.40.980.10 Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain 0.56 46.0 3.35e-01 100.0% 83.7%
1whnA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 42.0 3.63e-01 92.3% 78.2%
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 47.0 3.69e-01 100.0% 97.5%
2mjlA00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.56 38.0 2.65e-01 73.1% 61.9%
3kbqB00 3.40.980.10 Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain 0.56 45.0 3.35e-01 100.0% 84.0%
2jheA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 49.0 3.85e-01 100.0% 81.5%
2ltsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 41.0 3.65e-01 86.5% 86.0%
2fsdA00 2.60.40.2460 Mainly Beta › Sandwich › Immunoglobulin-like › Phage bIL170 RBP, head domain 0.55 45.0 3.66e-01 96.2% 71.8%
1olrA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.55 44.0 3.05e-01 100.0% 45.3%
4g41A00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.55 40.0 2.73e-01 84.6% 19.9%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.55 40.0 3.00e-01 82.7% 47.0%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 3.37e-01 100.0% 38.8%
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.54 45.0 3.91e-01 100.0% 71.9%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.54 43.0 3.38e-01 98.1% 84.2%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 36.0 3.40e-01 73.1% 53.5%
3vl9B00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.53 42.0 2.95e-01 100.0% 46.6%
4i1kA00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.53 43.0 3.43e-01 100.0% 42.4%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 43.0 3.23e-01 100.0% 80.8%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.52 41.0 3.24e-01 100.0% 63.6%
4qt4A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.52 37.0 2.72e-01 84.6% 32.8%
2ci9B00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 38.0 3.08e-01 86.5% 41.0%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 40.0 2.47e-01 88.5% 18.5%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.51 42.0 3.21e-01 100.0% 62.1%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5033631 2011.2.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.71 53.0 3.41e-01 82.7% 17.3%
4943859 2011.2.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.69 54.0 3.45e-01 90.4% 17.2%
4928586 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.69 52.0 5.06e-01 82.7% 87.9%
5014952 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.68 54.0 5.14e-01 86.5% 78.3%
5004588 2011.2.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.67 51.0 3.30e-01 86.5% 17.7%
3374952 375.4.1.5 few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like › RPA_interact_C 0.66 45.0 3.83e-01 71.2% 44.7%
4968653 4312.1.1.15 a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.66 51.0 4.30e-01 88.5% 76.8%
5061929 2011.2.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.65 48.0 3.13e-01 82.7% 18.8%
4465638 2011.2.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.65 48.0 3.17e-01 82.7% 19.2%
3230101 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.65 51.0 3.62e-01 88.5% 42.9%
4969276 2011.2.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.64 49.0 3.22e-01 84.6% 19.6%
4986583 2011.2.1.1 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.64 47.0 3.13e-01 84.6% 18.8%
137757 4312.1.1.9 a+b two layers › RelE-like › RelE-like › RelE-like › MqsR_toxin 0.63 51.0 4.21e-01 90.4% 81.4%
3378706 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.63 48.0 4.20e-01 84.6% 66.3%
4993636 4312.1.1.15 a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.62 47.0 4.30e-01 82.7% 94.3%
3589620 4312.1.1.11 a+b two layers › RelE-like › RelE-like › RelE-like › ParE-like_toxin 0.62 48.0 4.05e-01 86.5% 86.7%
3797651 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 41.0 3.57e-01 71.2% 57.8%
4976753 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 43.0 4.27e-01 78.8% 87.3%
4970953 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.59 45.0 3.18e-01 84.6% 33.5%
4958402 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.59 50.0 3.18e-01 100.0% 93.1%
3399883 4161.1.1.0 beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like 0.59 50.0 3.23e-01 100.0% 43.2%
3386147 2004.1.1.86 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › FeoB_N 0.58 42.0 2.96e-01 82.7% 27.0%
4544637 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.58 46.0 3.79e-01 86.5% 90.3%
5006332 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 52.0 4.40e-01 100.0% 92.9%
5079184 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.58 47.0 3.35e-01 100.0% 36.4%
3694207 4161.1.1.2 beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC_N 0.58 49.0 3.92e-01 98.1% 99.1%
3245433 207.1.1.52 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.58 48.0 3.06e-01 100.0% 19.8%
3721100 4161.1.1.0 beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like 0.57 48.0 3.03e-01 100.0% 39.4%
3356481 386.1.1.117 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.57 38.0 3.33e-01 71.2% 78.3%
3791839 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.56 43.0 3.77e-01 86.5% 57.5%
3574976 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.56 43.0 4.24e-01 86.5% 83.6%
3230771 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.55 43.0 3.62e-01 86.5% 50.0%
3622643 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.55 43.0 3.69e-01 86.5% 52.9%
4932673 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.55 37.0 3.23e-01 71.2% 47.8%
5064932 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.55 39.0 2.91e-01 82.7% 32.0%
3193883 4161.1.1.2 beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC_N 0.55 45.0 3.17e-01 98.1% 75.8%
3943423 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.54 39.0 3.85e-01 84.6% 86.7%
5065093 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.54 45.0 3.19e-01 100.0% 80.5%
4051921 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.54 44.0 3.12e-01 100.0% 75.3%
4459946 223.1.1.6 a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.54 46.0 2.99e-01 100.0% 29.8%
5045793 2004.1.1.86 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › FeoB_N 0.54 39.0 2.79e-01 84.6% 26.3%
3461850 150.1.1.88 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › PHD_Oberon 0.53 42.0 3.07e-01 100.0% 29.7%
4166572 2004.1.1.86 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › FeoB_N 0.53 38.0 2.86e-01 84.6% 31.8%
3505062 226.1.1.1 a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.53 43.0 3.24e-01 98.1% 44.8%
4466130 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.53 38.0 2.82e-01 82.7% 31.4%
3483278 4106.1.1.0 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack 0.52 35.0 2.46e-01 71.2% 80.0%
3595165 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 44.0 2.81e-01 100.0% 25.7%
3246854 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 36.0 3.44e-01 75.0% 73.8%
3651001 376.1.1.101 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PHD_Oberon 0.51 39.0 2.91e-01 100.0% 29.1%
4982457 7541.1.1.1 a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth 0.51 39.0 2.96e-01 100.0% 83.9%
3262894 59.1.3.1 beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains › RNA_pol_I_A49 0.51 35.0 2.97e-01 73.1% 69.5%
3881671 719.1.1.2 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.51 40.0 3.30e-01 100.0% 76.7%
3784907 896.1.1.3 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 0.51 35.0 3.17e-01 78.8% 58.8%
5039125 375.1.1.83 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.50 41.0 3.91e-01 96.2% 84.6%