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MF975721.1__ATN93643.1__VW6B_39__00039

Bact-Vir

MF975721.1__ATN93643.1__VW6B_39__00039

Identity

Accession:
MF975721 ↗
Kingdom:
phage

Quality

95.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-182
PDB
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.66 43.0 4.86e-01 100.0% 85.4%
4b3fX02 2.40.30.270 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 34.0 4.50e-01 82.5% 100.0%
5tr9A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 32.0 4.23e-01 79.7% 100.0%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.57 30.0 3.88e-01 100.0% 88.9%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 36.0 3.92e-01 100.0% 75.5%
1a8pA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 31.0 4.04e-01 83.1% 100.0%
4gf3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 24.0 2.75e-01 96.0% 51.2%
3lnnA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.53 29.0 3.71e-01 83.1% 96.7%
1iarB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 27.0 3.48e-01 78.5% 88.5%
4wtxA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 27.0 3.42e-01 78.5% 87.6%
1x5xA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 27.0 3.30e-01 83.6% 80.7%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 31.0 3.51e-01 100.0% 79.6%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965192 1.1.13.67 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2460 0.81 50.0 6.28e-01 99.4% 97.4%
4162532 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.75 33.0 5.00e-01 79.1% 97.3%
3164699 1.1.13.33 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DNA_circ_N 0.75 46.0 5.55e-01 100.0% 93.0%
3387360 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 35.0 4.87e-01 79.1% 95.3%
4157825 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 44.0 5.13e-01 100.0% 88.5%
4319764 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.69 34.0 4.27e-01 92.7% 76.4%
1790393 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 33.0 4.72e-01 92.7% 98.8%
4034209 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.67 47.0 5.34e-01 100.0% 94.0%
4954561 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.65 45.0 5.14e-01 100.0% 92.6%
5004559 1.1.13.75 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CIS_tube 0.65 48.0 5.40e-01 100.0% 97.8%
4873215 1.1.13.11 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 0.65 42.0 4.72e-01 100.0% 82.1%
4943168 1.1.7.144 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AAA_11 0.65 35.0 4.65e-01 83.6% 97.9%
3096576 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.64 46.0 4.85e-01 100.0% 81.1%
4033579 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.64 44.0 5.09e-01 100.0% 97.6%
4888732 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.64 42.0 4.45e-01 100.0% 75.0%
3976188 1.1.13.1 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube 0.62 42.0 4.34e-01 100.0% 72.1%
3452625 1.1.7.69 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.62 34.0 4.40e-01 78.0% 93.0%
4957560 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.60 39.0 4.46e-01 100.0% 88.5%
4929634 1.1.5.47 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.59 36.0 3.08e-01 100.0% 38.9%
3580256 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 30.0 3.84e-01 85.3% 87.4%
4960956 12.5.1.0 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.58 31.0 3.33e-01 84.7% 57.5%
3385472 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 30.0 4.05e-01 76.8% 100.0%
4521518 1.1.7.121 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Phage_BR0599 0.56 35.0 4.22e-01 100.0% 94.8%
4486974 1.1.7.84 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CzcB_C 0.55 30.0 3.90e-01 100.0% 100.0%
3555135 11.1.1.126 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL4Ra_N 0.53 31.0 3.78e-01 88.7% 90.0%
D2 high residues 196-390
PDB
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2f1lA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.68 32.0 4.70e-01 91.8% 97.8%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.65 41.0 4.76e-01 96.9% 87.6%
2lp6A00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.64 31.0 4.50e-01 75.9% 100.0%
4feuF01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 23.0 3.68e-01 91.8% 84.9%
4zciA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 30.0 4.15e-01 72.3% 90.1%
2j01100 2.30.170.40 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 0.61 21.0 3.08e-01 90.3% 64.8%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.59 29.0 4.04e-01 73.3% 98.9%
4b3fX02 2.40.30.270 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.58 30.0 4.18e-01 76.9% 100.0%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 33.0 3.91e-01 92.3% 80.9%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 24.0 3.68e-01 76.4% 93.8%
1vwxf00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.57 32.0 4.21e-01 93.3% 99.1%
2y4iB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 22.0 3.09e-01 93.3% 73.6%
1krhA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 28.0 3.95e-01 72.8% 100.0%
5tr9A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 28.0 3.84e-01 89.7% 100.0%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.54 34.0 3.86e-01 88.7% 84.8%
4n68A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 25.0 3.42e-01 77.4% 85.9%
1x4zA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 26.0 3.44e-01 87.2% 87.0%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 29.0 3.86e-01 94.4% 100.0%
1dyoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 34.0 3.73e-01 93.3% 79.5%
6efyA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 22.0 2.94e-01 93.3% 70.4%
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.52 27.0 3.12e-01 93.3% 65.7%
6i6rB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 25.0 3.27e-01 88.2% 83.8%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 28.0 3.72e-01 75.9% 93.9%
3qt2A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 24.0 3.26e-01 78.5% 86.6%
1o5uA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 23.0 3.34e-01 99.0% 94.3%
1n26A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 27.0 3.40e-01 94.4% 88.8%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965192 1.1.13.67 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2460 0.86 50.0 6.65e-01 95.9% 100.0%
3981654 1.1.13.40 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.85 48.0 6.44e-01 97.4% 100.0%
4423739 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.72 34.0 4.93e-01 93.8% 94.7%
4381495 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.72 33.0 4.96e-01 92.8% 97.8%
3164699 1.1.13.33 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DNA_circ_N 0.71 41.0 5.23e-01 97.4% 95.7%
3387360 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 32.0 4.67e-01 90.8% 95.3%
4581837 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.71 33.0 4.81e-01 91.8% 96.7%
4519111 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.70 33.0 4.86e-01 72.8% 97.8%
4353877 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.70 34.0 4.87e-01 93.3% 96.8%
3966626 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 33.0 4.85e-01 92.3% 97.8%
1790393 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 31.0 4.62e-01 89.2% 97.6%
4946634 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 32.0 4.66e-01 88.2% 95.6%
4203993 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.69 34.0 4.86e-01 93.3% 97.9%
4267752 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.69 34.0 4.79e-01 89.7% 96.8%
4087903 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.69 32.0 4.75e-01 91.8% 97.8%
3587074 1.1.13.17 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N 0.68 37.0 4.83e-01 99.0% 92.7%
4262187 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.68 33.0 4.68e-01 92.3% 94.7%
4619658 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.68 34.0 4.76e-01 88.7% 96.8%
4399542 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.68 32.0 4.71e-01 71.8% 98.9%
4493188 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.68 33.0 4.62e-01 73.3% 94.7%
4319764 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.67 31.0 4.00e-01 88.7% 74.5%
4395520 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.67 32.0 4.54e-01 93.3% 93.7%
5004559 1.1.13.75 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CIS_tube 0.67 45.0 5.32e-01 97.4% 97.8%
4939469 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.67 31.0 4.41e-01 70.8% 90.5%
4205951 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.67 32.0 4.57e-01 91.8% 94.7%
4208972 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.67 31.0 4.36e-01 92.3% 88.0%
5074909 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 31.0 4.55e-01 71.3% 100.0%
3096576 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.65 44.0 4.81e-01 97.4% 83.0%
5075955 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 31.0 4.51e-01 71.3% 100.0%
4888732 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.64 40.0 4.45e-01 96.9% 76.9%
4957560 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.63 39.0 4.61e-01 98.5% 90.8%
3243970 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 32.0 4.49e-01 73.8% 100.0%
3972951 1.1.7.88 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.61 26.0 4.02e-01 72.8% 100.0%
3247872 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.61 27.0 3.34e-01 94.4% 62.4%
3822637 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 28.0 3.77e-01 72.8% 84.2%
2446805 11.1.1.14 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.60 25.0 3.25e-01 94.4% 66.4%
3262643 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.60 27.0 3.34e-01 94.9% 64.0%
3930882 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 30.0 4.22e-01 72.3% 100.0%
5010878 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 32.0 4.13e-01 78.5% 93.0%
3171334 1.1.7.102 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF28793 0.56 32.0 4.21e-01 76.9% 100.0%
3256728 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.55 30.0 3.40e-01 99.0% 68.3%
3277790 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.55 30.0 4.05e-01 90.3% 100.0%
3259959 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 27.0 3.65e-01 86.7% 90.0%
4521518 1.1.7.121 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Phage_BR0599 0.55 32.0 4.08e-01 76.4% 97.4%
3935249 11.1.1.955 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_Dep-1_4th 0.54 26.0 3.51e-01 88.2% 86.0%
4373113 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 29.0 3.80e-01 92.3% 95.2%
2606543 11.42.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › beta-xylosidase (XylC) insertion domain › beta-xylosidase (XylC) insertion domain › GH141_M 0.53 41.0 4.22e-01 88.2% 83.3%
1286181 881.1.1.7 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3805 0.52 27.0 3.15e-01 93.3% 67.6%
3603556 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.52 30.0 3.62e-01 91.8% 83.8%
4010630 2004.1.1.10 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab 0.52 33.0 2.52e-01 88.7% 28.8%