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MF979564.1__ATS93996.1__P13BB106kb_p012__00012

Bact-Vir

MF979564.1__ATS93996.1__P13BB106kb_p012__00012

Identity

Accession:
MF979564 ↗
Kingdom:
phage

Quality

95.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Hongcheonvirus› Pectobacterium_phage_DU_PP_V

TaxID: 2041492

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-96
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.63 45.0 5.12e-01 94.7% 100.0%
3d5pA00 3.40.1580.10 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › SMI1/KNR4-like 0.62 42.0 3.77e-01 100.0% 49.6%
3jr1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 42.0 4.13e-01 75.5% 100.0%
2zfdB00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.56 33.0 3.09e-01 75.5% 47.4%
1e2tA02 3.30.1120.150 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.56 35.0 3.67e-01 77.7% 68.6%
5c3vA01 3.30.800.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta 0.55 39.0 3.26e-01 75.5% 98.2%
2r0hA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 41.0 3.42e-01 78.7% 55.6%
5z1gB01 3.40.50.10480 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain 0.54 46.0 3.71e-01 97.9% 91.7%
4fwwA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 47.0 3.00e-01 95.7% 37.9%
3dsmA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 49.0 3.35e-01 100.0% 34.9%
2f0cA02 2.60.40.1830 Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain 0.53 36.0 3.55e-01 70.2% 83.7%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 36.0 3.77e-01 81.9% 75.3%
5xrkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 39.0 3.44e-01 78.7% 66.7%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 48.0 3.27e-01 100.0% 38.1%
3auxA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 38.0 2.67e-01 77.7% 78.2%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.52 40.0 2.82e-01 93.6% 25.7%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 39.0 3.33e-01 78.7% 62.9%
3vv1A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 39.0 3.45e-01 80.9% 73.8%
6n44A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 39.0 3.48e-01 80.9% 79.9%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 3.40e-01 81.9% 75.7%
2ml5A00 3.10.450.410 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 3.11e-01 74.5% 71.0%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4552798 3699.1.1.0 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain 0.75 33.0 5.09e-01 74.5% 100.0%
4656512 809.1.1.0 ↗ a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.70 38.0 4.69e-01 73.4% 85.0%
3168452 331.10.2.3 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › Med1 0.67 39.0 3.78e-01 73.4% 51.4%
3938510 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.64 37.0 4.32e-01 70.2% 81.5%
3280354 3699.1.1.0 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain 0.57 33.0 4.21e-01 77.7% 98.2%
2985816 12.3.1.19 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.56 43.0 3.71e-01 79.8% 71.3%
3467367 708.1.1.7 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.56 33.0 4.00e-01 73.4% 91.7%
3740435 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.56 48.0 3.31e-01 95.7% 49.4%
3230791 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 38.0 3.76e-01 70.2% 100.0%
4579655 5.1.4.38 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.55 50.0 3.22e-01 98.9% 29.8%
3423460 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.55 49.0 3.13e-01 98.9% 28.2%
5005406 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 50.0 3.53e-01 100.0% 57.5%
3609692 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 49.0 3.16e-01 98.9% 24.2%
3343802 5.1.3.23 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.54 47.0 3.18e-01 95.7% 45.2%
3271862 5.1.4.156 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 0.54 46.0 3.10e-01 95.7% 43.9%
3936800 10.1.1.92 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF26430 0.54 40.0 2.96e-01 78.7% 46.1%
3496419 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 47.0 2.77e-01 97.9% 19.4%
3192325 376.1.1.43 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PRT6_C 0.53 40.0 3.19e-01 79.8% 65.6%
None — 0.53 41.0 2.47e-01 84.0% 52.7%
3467756 331.3.1.25 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PaO 0.53 39.0 2.85e-01 77.7% 36.6%
3609394 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 47.0 3.18e-01 98.9% 43.1%
3601202 5.1.4.220 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.53 48.0 3.29e-01 100.0% 48.8%
3240041 5.1.4.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.52 46.0 3.15e-01 95.7% 37.2%
3399742 5.1.4.220 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.52 47.0 3.22e-01 100.0% 45.9%
3793430 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.52 37.0 3.72e-01 74.5% 80.0%
3894260 5.1.4.220 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_2nd 0.52 47.0 3.14e-01 98.9% 44.8%
4468976 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.52 42.0 3.03e-01 90.4% 73.8%
4464751 4041.1.1.0 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.52 38.0 3.13e-01 77.7% 81.2%
1548151 331.1.1.9 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › RepD-like_N 0.52 30.0 3.05e-01 74.5% 56.8%
3166679 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 46.0 3.10e-01 100.0% 47.0%
3251495 376.1.1.43 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PRT6_C 0.51 38.0 3.49e-01 78.7% 86.4%
4106342 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.51 38.0 3.95e-01 86.2% 83.3%
3229399 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 46.0 3.14e-01 100.0% 29.3%
3400083 5.1.5.18 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Vps16_N 0.51 45.0 3.20e-01 100.0% 41.7%
3479249 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 45.0 2.99e-01 100.0% 28.5%
3785928 220.1.1.245 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29445 0.51 43.0 3.53e-01 98.9% 51.2%
3708545 59.1.1.0 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like 0.51 40.0 4.27e-01 90.4% 97.5%
4003936 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 45.0 3.20e-01 95.7% 44.2%
3958592 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.50 46.0 3.11e-01 100.0% 69.1%
3682185 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.50 44.0 2.89e-01 100.0% 35.2%