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MF988720.1__ATN93385.1__X__00013
Bact-VirMF988720.1__ATN93385.1__X__00013
Identity
- Accession:
- MF988720 ↗
- Kingdom:
- phage
Quality
90.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Andersonviridae›
Pseudoalteromonas_phage_J2-1_QLiu-2017
TaxID: 3117586
Cluster
View cluster (47 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-113
Domain cluster:
rep: NC_029067.1__YP_009222896.1__VPLG_00047__00047__D31-111
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2eqnA01 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.53 | 34.0 | 3.73e-01 | 74.0% | 79.3% |
| 4ep8B00 | 2.10.150.10 | Mainly Beta › Ribbon › Urease, subunit B › Urease, beta subunit | 0.52 | 40.0 | 4.06e-01 | 89.4% | 85.1% |
| 3soeA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.52 | 37.0 | 3.75e-01 | 74.0% | 91.1% |
| 1b23P03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.51 | 37.0 | 3.87e-01 | 75.0% | 86.2% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5083816 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.66 | 43.0 | 5.16e-01 | 97.1% | 100.0% |
| 3670049 | 11.5.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Urease, beta-subunit › Urease, beta-subunit › Urease_beta,Urease_linker | 0.53 | 42.0 | 3.91e-01 | 88.5% | 66.4% |
| 3516283 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.53 | 32.0 | 3.82e-01 | 92.3% | 90.0% |
| 4150042 | 1.1.8.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_SelB | 0.53 | 38.0 | 4.08e-01 | 76.9% | 86.7% |
| 3966451 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.52 | 37.0 | 3.88e-01 | 74.0% | 84.2% |
| 185398 | 11.5.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Urease, beta-subunit › Urease, beta-subunit › Urease_beta,Urease_linker | 0.52 | 42.0 | 3.81e-01 | 88.5% | 63.7% |
| 4282537 | 11.5.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Urease, beta-subunit › Urease, beta-subunit › Urease_beta | 0.52 | 42.0 | 4.03e-01 | 88.5% | 79.2% |
| 3955063 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.51 | 36.0 | 3.26e-01 | 86.5% | 52.4% |
| 3290618 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.50 | 34.0 | 3.11e-01 | 85.6% | 51.4% |