←Back to structures

MF988720.1__ATN93454.1__X__00082

Bact-Vir

MF988720.1__ATN93454.1__X__00082

Identity

Accession:
MF988720 ↗
Kingdom:
phage

Quality

88.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Andersonviridae› Pseudoalteromonas_phage_J2-1_QLiu-2017

TaxID: 3117586

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 56-140
PDB
Domain cluster: rep: MF098558.1__ASV43971.1__X__00039__D2-79
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.79 58.0 6.15e-01 97.6% 85.5%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.79 60.0 6.33e-01 100.0% 88.2%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.76 47.0 5.29e-01 84.7% 80.6%
4il7A00 2.60.120.1300 Mainly Beta › Sandwich › Jelly Rolls › 0.68 37.0 3.75e-01 85.9% 52.9%
3lqmA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 39.0 3.73e-01 90.6% 47.1%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.67 61.0 4.65e-01 98.8% 82.4%
4eq3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 41.0 3.82e-01 90.6% 48.1%
2i1sA00 3.10.290.30 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › MM3350-like 0.66 59.0 4.64e-01 100.0% 96.1%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.65 40.0 3.27e-01 84.7% 31.7%
6iomB01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.65 38.0 3.98e-01 85.9% 63.6%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 37.0 3.70e-01 83.5% 57.6%
1n26A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 41.0 3.82e-01 88.2% 54.2%
5e55B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 38.0 3.78e-01 90.6% 57.0%
1m1cA00 3.90.1840.10 Alpha Beta › Alpha-Beta Complex › Major capsid protein › Major capsid protein 0.61 52.0 3.06e-01 90.6% 88.8%
2eddA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 37.0 3.42e-01 91.8% 44.6%
1r0uA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 49.0 4.15e-01 88.2% 91.5%
2vrsA03 2.60.90.40 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.60 39.0 3.39e-01 85.9% 42.4%
4m8rA01 2.60.40.3920 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 40.0 3.74e-01 91.8% 56.3%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.59 41.0 3.44e-01 98.8% 42.7%
5jpnB04 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.59 35.0 3.11e-01 87.1% 41.3%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.59 53.0 3.85e-01 100.0% 90.8%
7y8sB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 35.0 3.56e-01 87.1% 57.5%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.58 40.0 3.68e-01 87.1% 53.2%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 39.0 3.80e-01 87.1% 62.1%
8t5tA01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.58 50.0 3.96e-01 100.0% 87.0%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.57 39.0 3.85e-01 70.6% 100.0%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.57 35.0 3.84e-01 87.1% 78.8%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.56 43.0 3.88e-01 87.1% 58.8%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 38.0 3.63e-01 89.4% 59.8%
5jgfA02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.55 45.0 3.75e-01 88.2% 74.5%
5kycB02 2.20.210.10 Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › ubp-family deubiquitinating enzyme superfamily 0.55 34.0 4.00e-01 84.7% 100.0%
4ksnA00 6.20.250.80 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.55 38.0 4.24e-01 89.4% 93.8%
2pn5A08 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.54 32.0 2.97e-01 84.7% 43.2%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 44.0 2.94e-01 87.1% 25.3%
1ywhA01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.54 35.0 3.65e-01 95.3% 70.4%
4emeC02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.54 44.0 3.78e-01 89.4% 73.3%
2mj7A00 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.53 38.0 3.25e-01 75.3% 50.4%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 37.0 3.32e-01 87.1% 50.8%
3q8pB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.53 39.0 3.69e-01 85.9% 63.9%
2zl7A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.52 33.0 3.26e-01 85.9% 58.2%
7bi2A02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 40.0 3.50e-01 83.5% 90.9%
1r9fA01 3.30.390.180 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 0.52 37.0 3.43e-01 83.5% 57.8%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.52 36.0 3.02e-01 87.1% 40.1%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.51 32.0 2.94e-01 85.9% 44.0%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.51 36.0 3.29e-01 89.4% 55.9%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 40.0 2.78e-01 87.1% 26.7%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 40.0 3.24e-01 88.2% 86.4%
2wliA02 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.50 39.0 3.25e-01 87.1% 45.3%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5074648 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.88 65.0 6.96e-01 97.6% 86.7%
4939739 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.86 57.0 6.88e-01 87.1% 98.3%
5065436 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.85 58.0 6.71e-01 90.6% 93.8%
5012895 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.85 54.0 6.62e-01 85.9% 100.0%
5014684 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.85 55.0 6.65e-01 89.4% 98.3%
4160542 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.84 55.0 6.65e-01 85.9% 98.3%
4967222 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.83 56.0 6.68e-01 88.2% 98.3%
5067865 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.83 62.0 6.85e-01 98.8% 94.3%
5000510 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.83 62.0 6.62e-01 100.0% 88.0%
4969863 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.83 63.0 6.71e-01 100.0% 89.3%
4937773 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.83 54.0 6.47e-01 85.9% 98.3%
2831852 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.81 61.0 5.69e-01 98.8% 65.3%
3345090 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.80 61.0 5.54e-01 100.0% 62.0%
2512518 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.80 60.0 5.60e-01 98.8% 65.3%
2527501 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.80 61.0 5.62e-01 100.0% 64.4%
2106285 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.79 60.0 5.47e-01 100.0% 62.0%
4013514 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.79 60.0 5.58e-01 100.0% 64.8%
3979798 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.74 65.0 5.97e-01 100.0% 74.5%
3559814 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.72 42.0 4.04e-01 87.1% 51.6%
5081134 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.71 43.0 4.98e-01 82.4% 85.0%
3582591 10.7.1.0 ↗ beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.69 40.0 3.57e-01 84.7% 42.6%
4059006 9.9.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB 0.66 52.0 4.61e-01 85.9% 100.0%
3490350 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.65 42.0 4.74e-01 90.6% 86.2%
4945478 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.65 41.0 3.44e-01 91.8% 37.9%
3568886 2492.1.1.29 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › APOBEC4_like 0.64 42.0 3.14e-01 84.7% 26.5%
5044312 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 40.0 3.84e-01 90.6% 54.0%
3989353 9.9.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.62 49.0 4.36e-01 85.9% 100.0%
3565481 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.62 39.0 3.72e-01 87.1% 51.4%
3211800 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 44.0 4.38e-01 88.2% 70.0%
4965619 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 37.0 3.75e-01 83.5% 63.5%
3630093 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.59 40.0 4.20e-01 85.9% 78.7%
141886 11.1.1.137 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Tafi-CsgC 0.58 39.0 3.80e-01 87.1% 62.1%
3217546 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.57 39.0 3.59e-01 88.2% 53.0%
4647057 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 36.0 3.38e-01 90.6% 50.5%
4964280 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 36.0 3.55e-01 91.8% 60.0%
3666673 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 41.0 4.33e-01 87.1% 86.7%
5038654 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 36.0 3.68e-01 85.9% 68.8%
4983111 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 36.0 3.84e-01 85.9% 76.0%
4960838 11.14.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domains in STT3 › Ig-like domains in STT3 › AglB_L1 0.55 38.0 3.74e-01 85.9% 67.8%
5042035 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.53 32.0 2.39e-01 74.1% 22.9%
3738952 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 3.50e-01 87.1% 53.5%
3300479 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.53 37.0 3.35e-01 87.1% 53.0%
3598842 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.52 36.0 3.05e-01 85.9% 41.3%
3514371 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.51 40.0 3.02e-01 84.7% 51.2%
5046219 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 35.0 3.26e-01 85.9% 55.5%