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MF988720.1__ATN93478.1__X__00106

Bact-Vir

MF988720.1__ATN93478.1__X__00106

Identity

Accession:
MF988720 ↗
Kingdom:
phage

Quality

68.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Andersonviridae› Pseudoalteromonas_phage_J2-1_QLiu-2017

TaxID: 3117586

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-129
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 36.0 4.36e-01 85.6% 97.1%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 33.0 3.92e-01 76.6% 84.5%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.57 41.0 3.73e-01 74.8% 73.5%
3zugB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.57 47.0 4.37e-01 92.8% 70.4%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.56 38.0 4.31e-01 73.9% 93.9%
1k5dB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.87e-01 80.2% 77.4%
2xn1A01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.55 41.0 3.04e-01 79.3% 86.5%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.55 38.0 3.91e-01 70.3% 85.6%
3v8uA02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.54 40.0 3.46e-01 79.3% 95.0%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.53 33.0 3.92e-01 81.1% 98.6%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.85e-01 84.7% 82.1%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 36.0 3.11e-01 73.0% 90.3%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 40.0 3.82e-01 84.7% 85.3%
1dhkB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 36.0 3.00e-01 73.9% 69.2%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4023315 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 42.0 4.55e-01 73.9% 84.4%
3502557 220.1.1.115 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_19 0.58 47.0 3.92e-01 85.6% 85.8%
3171604 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 37.0 4.42e-01 81.1% 96.0%
3744425 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.57 47.0 3.15e-01 87.4% 61.4%
3413910 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.57 47.0 4.41e-01 88.3% 81.5%
3923150 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.57 42.0 4.09e-01 78.4% 88.0%
3547482 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.56 43.0 3.67e-01 79.3% 62.9%
3718296 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 46.0 4.21e-01 87.4% 86.1%
3787626 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.56 42.0 4.16e-01 77.5% 91.3%
4306716 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.56 47.0 3.22e-01 91.0% 73.6%
3995389 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.55 46.0 4.23e-01 89.2% 82.1%
3174331 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.55 44.0 4.08e-01 82.9% 77.8%
3463482 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 39.0 4.09e-01 85.6% 80.0%
3900190 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 4.25e-01 89.2% 91.0%
3744143 220.1.1.32 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.54 44.0 4.04e-01 89.2% 78.0%
3811267 10.1.1.58 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neprosin 0.54 40.0 3.12e-01 78.4% 76.7%
4032997 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 38.0 3.72e-01 73.9% 96.8%
3398585 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 38.0 3.66e-01 73.9% 82.3%
3739939 220.1.1.29 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_3 0.54 44.0 4.09e-01 88.3% 84.9%
3500713 220.1.1.56 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH 0.53 37.0 3.57e-01 71.2% 69.6%
3931349 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.53 45.0 4.20e-01 91.9% 86.3%
5031673 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 41.0 4.18e-01 83.8% 87.6%
4890881 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.52 40.0 3.82e-01 79.3% 85.7%
3609858 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.52 40.0 4.09e-01 79.3% 91.4%
3391330 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.52 39.0 3.86e-01 79.3% 85.8%
3592221 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 37.0 3.66e-01 73.9% 74.6%
3597380 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 39.0 3.87e-01 79.3% 89.2%
3593275 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 39.0 3.96e-01 79.3% 90.9%
3933227 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.83e-01 77.5% 83.5%
3495962 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 39.0 3.92e-01 80.2% 87.8%
3596842 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 39.0 3.84e-01 80.2% 80.0%
3591170 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.51 39.0 3.79e-01 79.3% 85.8%
3328088 243.5.1.1 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region › Cu_amine_oxidN2 0.51 38.0 3.98e-01 77.5% 88.0%
3616027 220.1.1.14 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.51 38.0 3.84e-01 79.3% 91.3%