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MF988720.1__ATN93533.1__X__00161

Bact-Vir

MF988720.1__ATN93533.1__X__00161

Identity

Accession:
MF988720 ↗
Kingdom:
phage

Quality

38.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Andersonviridae› Pseudoalteromonas_phage_J2-1_QLiu-2017

TaxID: 3117586

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 69-110
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ktmA00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.84 72.0 6.18e-01 100.0% 72.1%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 51.0 3.95e-01 76.2% 39.1%
3besR03 6.10.140.1480 Special › Helix non-globular › Helix Hairpins › 0.71 59.0 5.42e-01 95.2% 71.4%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.69 58.0 5.29e-01 95.2% 82.5%
1e6cA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 58.0 3.89e-01 97.6% 24.7%
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.69 48.0 3.84e-01 76.2% 43.0%
2bskB00 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.68 58.0 5.12e-01 100.0% 73.8%
2e5yA02 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.68 49.0 4.80e-01 76.2% 75.6%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.66 51.0 4.86e-01 88.1% 71.4%
4lp8A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 49.0 3.71e-01 83.3% 34.6%
4mtxD00 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.66 50.0 3.86e-01 83.3% 36.8%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.66 51.0 4.21e-01 88.1% 49.4%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.65 51.0 4.15e-01 85.7% 46.8%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.65 46.0 4.39e-01 76.2% 78.4%
3gnlB02 1.10.287.1890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 50.0 4.26e-01 85.7% 55.9%
2i00C01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 48.0 3.32e-01 90.5% 25.7%
2jdiH02 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.60 48.0 4.86e-01 97.6% 88.1%
4ragA02 1.10.10.430 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphatase 2C, C-terminal domain suprefamily 0.59 42.0 3.83e-01 100.0% 51.5%
2wbiB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.58 46.0 3.20e-01 92.9% 55.7%
3lfuA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.58 49.0 4.25e-01 100.0% 95.7%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4976490 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.75 64.0 4.40e-01 100.0% 29.3%
3970703 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.75 63.0 5.31e-01 100.0% 56.0%
4075392 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.74 64.0 3.92e-01 100.0% 16.5%
3274317 109.4.1.1446 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRP12_HEAT, HEAT_RRP12_N 0.74 61.0 3.27e-01 100.0% 4.3%
3894123 148.1.3.56 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Arv1 0.71 60.0 3.95e-01 100.0% 22.1%
3361803 632.3.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain 0.70 58.0 5.56e-01 97.6% 80.0%
3234298 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.70 50.0 4.57e-01 76.2% 70.9%
3412002 3755.3.1.295 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › WWC1 0.69 49.0 2.96e-01 76.2% 12.1%
3638943 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.68 50.0 2.86e-01 81.0% 62.1%
3605504 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.68 53.0 3.44e-01 100.0% 17.9%
4615969 150.8.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE 0.68 60.0 3.99e-01 100.0% 93.1%
5045310 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.67 47.0 4.04e-01 76.2% 71.4%
None — 0.67 57.0 3.55e-01 100.0% 38.8%
3906366 5057.1.1.1 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.66 52.0 3.47e-01 85.7% 24.4%
3493417 4163.1.1.1 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.64 50.0 3.33e-01 85.7% 23.7%
4311479 507.1.1.1 ↗ alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB 0.63 52.0 3.50e-01 92.9% 50.3%
3406190 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.63 53.0 3.18e-01 100.0% 13.3%
3739454 192.5.1.38 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › NEDD4_Bsd2 0.63 53.0 4.00e-01 95.2% 95.2%
5037413 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.59 52.0 3.43e-01 97.6% 66.1%
3539986 5058.1.1.90 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › TMEM169 0.57 45.0 3.93e-01 100.0% 65.3%
3912477 5001.1.1.5 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.57 45.0 2.77e-01 100.0% 30.9%
3523218 604.1.1.112 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › CCDC15_C 0.54 47.0 3.53e-01 97.6% 91.0%
3519649 219.1.1.23 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB 0.53 42.0 2.67e-01 97.6% 15.8%
D2 high residues 217-313
PDB
D3 medium residues 1-58
PDB
D4 medium residues 115-211
PDB