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MF999224.1__ATN93919.1__LJ_59__00059
Bact-VirMF999224.1__ATN93919.1__LJ_59__00059
Identity
- Accession:
- MF999224 ↗
- Kingdom:
- phage
Quality
83.5
mean pLDDT
Taxonomy
TaxID: 2041454
Cluster
View cluster (13 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 45-144
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fx3B00 | 3.10.420.10 | Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like | 0.84 | 72.0 | 6.16e-01 | 100.0% | 60.4% |
| 2hngA00 | 3.10.420.10 | Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like | 0.74 | 63.0 | 5.79e-01 | 97.0% | 72.0% |
| 2r76A00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.72 | 57.0 | 5.17e-01 | 90.0% | 62.9% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.70 | 58.0 | 4.93e-01 | 90.0% | 56.1% |
| 4kwyA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.66 | 56.0 | 5.05e-01 | 92.0% | 85.4% |
| 2n8xA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.66 | 51.0 | 4.36e-01 | 90.0% | 50.6% |
| 5tseA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.64 | 49.0 | 4.45e-01 | 90.0% | 59.6% |
| 2jxpA01 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.62 | 50.0 | 4.48e-01 | 88.0% | 63.1% |
| 2jbvA04 | 3.30.410.40 | Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › | 0.56 | 44.0 | 3.72e-01 | 85.0% | 73.0% |
| 1uv4A00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.56 | 35.0 | 2.54e-01 | 76.0% | 21.3% |
| 4zj9A00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 34.0 | 3.49e-01 | 100.0% | 63.4% |
| 1dpgA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.54 | 43.0 | 3.11e-01 | 88.0% | 90.0% |
| 2w4yA00 | 2.40.160.220 | Mainly Beta › Beta Barrel › Porin › | 0.54 | 35.0 | 3.31e-01 | 87.0% | 53.3% |
| 3f9sB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 38.0 | 3.40e-01 | 92.0% | 51.8% |
| 2xhgA02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.53 | 42.0 | 3.08e-01 | 86.0% | 32.0% |
| 7t4dA01 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.53 | 49.0 | 3.44e-01 | 100.0% | 82.1% |
| 1ohgA01 | 3.30.2400.10 | Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › Major capsid protein gp5 | 0.53 | 40.0 | 3.52e-01 | 78.0% | 75.3% |
| 1jv2A04 | 2.60.40.1530 | Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 4 | 0.53 | 47.0 | 3.83e-01 | 100.0% | 92.0% |
| 1z5bB03 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.52 | 39.0 | 3.43e-01 | 79.0% | 77.9% |
| 5ds1A00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 34.0 | 3.50e-01 | 72.0% | 71.7% |
| 1aq3A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.50 | 40.0 | 3.66e-01 | 84.0% | 91.5% |
| 4lgqA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 35.0 | 3.20e-01 | 84.0% | 53.4% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4652688 | 504.1.1.1 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB | 0.86 | 74.0 | 6.43e-01 | 100.0% | 63.6% |
| 4037556 | 504.1.1.1 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB | 0.85 | 71.0 | 6.26e-01 | 100.0% | 62.9% |
| 3604380 | 504.1.1.1 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB | 0.85 | 73.0 | 6.34e-01 | 100.0% | 62.8% |
| 4199388 | 504.1.1.1 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB | 0.80 | 70.0 | 6.08e-01 | 100.0% | 63.4% |
| 4540264 | 504.1.1.1 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB | 0.77 | 73.0 | 6.24e-01 | 100.0% | 68.7% |
| 1883638 | 504.1.1.1 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB | 0.77 | 64.0 | 5.46e-01 | 100.0% | 56.8% |
| 4279828 | 504.1.1.1 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB | 0.76 | 72.0 | 5.90e-01 | 100.0% | 65.9% |
| 4025861 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.75 | 61.0 | 5.06e-01 | 90.0% | 51.2% |
| 4978131 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.71 | 56.0 | 4.04e-01 | 100.0% | 30.5% |
| 3808882 | 4051.1.1.1 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B | 0.70 | 59.0 | 4.82e-01 | 89.0% | 50.9% |
| 5065294 | 4051.1.1.0 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz | 0.70 | 61.0 | 5.06e-01 | 99.0% | 55.3% |
| 4975736 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.66 | 51.0 | 3.51e-01 | 100.0% | 23.8% |
| 5056516 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.65 | 58.0 | 4.11e-01 | 100.0% | 34.1% |
| 3593462 | 5.1.2.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N | 0.62 | 38.0 | 2.61e-01 | 73.0% | 17.4% |
| 3533135 | 2492.1.1.36 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › ODR4-like | 0.61 | 46.0 | 3.60e-01 | 79.0% | 71.6% |
| 4640369 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.59 | 35.0 | 3.50e-01 | 100.0% | 55.2% |
| 3110810 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.57 | 40.0 | 2.97e-01 | 72.0% | 60.2% |
| 3257721 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.56 | 36.0 | 3.38e-01 | 100.0% | 52.0% |
| 3224308 | 2484.1.1.39 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Fumble | 0.56 | 36.0 | 3.32e-01 | 70.0% | 50.8% |
| 4011172 | 331.3.1.46 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF7053 | 0.55 | 40.0 | 3.33e-01 | 77.0% | 97.3% |
| 4048404 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.55 | 43.0 | 3.24e-01 | 87.0% | 36.2% |
| 3437304 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.54 | 34.0 | 3.51e-01 | 85.0% | 65.3% |
| 5008723 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.54 | 45.0 | 3.81e-01 | 94.0% | 93.7% |
| 3730466 | 2498.1.1.39 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like | 0.53 | 38.0 | 3.32e-01 | 76.0% | 71.9% |
| 3203691 | 11.1.1.667 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAPPC13_N | 0.53 | 47.0 | 4.11e-01 | 100.0% | 93.5% |
| 3470142 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.53 | 36.0 | 3.46e-01 | 100.0% | 60.9% |
| 4048406 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.53 | 41.0 | 3.14e-01 | 86.0% | 35.0% |
| 3273629 | 12.3.1.13 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C | 0.52 | 42.0 | 2.98e-01 | 86.0% | 31.8% |
| 3183304 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.52 | 41.0 | 3.69e-01 | 87.0% | 92.4% |
| 3505113 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.52 | 36.0 | 3.57e-01 | 84.0% | 67.6% |
| 3240774 | 2492.1.1.36 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › ODR4-like | 0.51 | 42.0 | 3.36e-01 | 93.0% | 53.3% |
| 3373981 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.51 | 41.0 | 3.11e-01 | 84.0% | 38.2% |
| 3517405 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 35.0 | 3.96e-01 | 77.0% | 100.0% |
| 3451106 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.51 | 40.0 | 3.63e-01 | 85.0% | 74.8% |
| 3482064 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.51 | 38.0 | 3.32e-01 | 85.0% | 51.3% |
| 4015212 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.50 | 37.0 | 3.34e-01 | 98.0% | 54.5% |
| 2048179 | 2485.3.1.8 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › P22_CoatProtein | 0.50 | 37.0 | 2.93e-01 | 79.0% | 86.2% |