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MG004687.1__ATS93353.1__mutPK1A2_p54__00051

Bact-Vir

MG004687.1__ATS93353.1__mutPK1A2_p54__00051

Identity

Accession:
MG004687 ↗
Kingdom:
phage

Quality

63.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autosignataviridae› Vectrevirus› Escherichia_phage_mutPK1A2

TaxID: 2783800

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-76
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bdxA00 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.75 49.0 4.21e-01 92.6% 43.4%
1v6zA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.72 61.0 5.85e-01 100.0% 87.7%
2cg7A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.67 47.0 5.00e-01 92.6% 87.0%
6baoA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.66 52.0 3.87e-01 88.9% 65.0%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 48.0 5.05e-01 85.2% 91.7%
1o9aA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.65 42.0 4.52e-01 88.9% 81.8%
3kl9A02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.65 54.0 4.89e-01 92.6% 73.0%
2q2eB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.64 53.0 3.62e-01 100.0% 35.3%
1xn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 49.0 3.66e-01 85.2% 40.6%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.63 52.0 5.01e-01 98.1% 80.6%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 45.0 3.67e-01 100.0% 39.5%
3tfiA00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.61 47.0 2.87e-01 90.7% 12.5%
1v5vA01 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.60 48.0 3.44e-01 88.9% 29.3%
1qyaB01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.60 51.0 3.84e-01 100.0% 44.4%
1x31C01 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.60 46.0 3.78e-01 88.9% 44.8%
2kc5A01 3.30.1460.40 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › [NiFe]-hydrogenase assembly chaperone, HybE 0.59 50.0 3.80e-01 96.3% 46.3%
1tpmA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.59 41.0 4.27e-01 81.5% 82.0%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 51.0 4.75e-01 98.1% 82.4%
2q07A03 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.58 47.0 4.57e-01 100.0% 93.9%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 48.0 4.05e-01 100.0% 59.0%
2k6pA00 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.58 48.0 4.25e-01 98.1% 95.2%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 49.0 3.05e-01 100.0% 29.5%
3ilvA01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.56 45.0 3.00e-01 100.0% 20.2%
2ea9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 46.0 3.95e-01 96.3% 55.3%
3klkA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.55 45.0 3.30e-01 96.3% 42.2%
2crvA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 45.0 3.91e-01 100.0% 82.8%
6khjH01 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.54 42.0 2.70e-01 96.3% 77.7%
1mpgA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.52 39.0 3.26e-01 87.0% 55.4%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.52 42.0 3.47e-01 100.0% 86.0%
7szeB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.52 42.0 3.45e-01 94.4% 86.0%
3hi2B00 3.30.2310.40 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › 0.52 43.0 3.58e-01 94.4% 57.7%
2nbmA00 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.52 40.0 3.37e-01 94.4% 48.6%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 34.0 3.11e-01 72.2% 76.5%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.79 58.0 3.44e-01 100.0% 11.5%
176 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.72 61.0 5.90e-01 100.0% 90.5%
4141923 391.1.2.7 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › fn1 0.72 47.0 5.10e-01 90.7% 82.2%
4030408 2003.1.5.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.68 53.0 3.52e-01 100.0% 21.0%
3703499 884.1.1.1 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.68 60.0 4.80e-01 100.0% 56.2%
1014 66.1.1.2 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske_2 0.67 47.0 5.01e-01 94.4% 91.1%
3611201 884.1.1.0 ↗ a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain 0.67 59.0 4.76e-01 100.0% 56.2%
None — 0.67 52.0 3.51e-01 100.0% 22.1%
3676128 1.1.8.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.65 51.0 4.06e-01 88.9% 52.2%
None — 0.64 49.0 3.34e-01 100.0% 21.9%
2068913 304.107.1.1 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T 0.62 48.0 3.57e-01 90.7% 33.3%
3201338 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 50.0 3.34e-01 100.0% 35.3%
3623941 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.59 42.0 4.48e-01 88.9% 91.1%
3271259 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.59 37.0 3.16e-01 100.0% 40.0%
3513418 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.58 44.0 4.69e-01 81.5% 100.0%
3574976 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.57 45.0 4.54e-01 100.0% 92.7%
148788 5.1.3.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylesterase 0.57 49.0 3.05e-01 100.0% 29.5%
4964269 210.1.2.8 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › TANGO2 0.57 47.0 3.18e-01 100.0% 92.0%
3708068 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 39.0 2.53e-01 72.2% 38.0%
4644945 246.1.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase 0.56 46.0 3.14e-01 100.0% 23.2%
5008603 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.55 45.0 3.16e-01 94.4% 32.6%
3838516 246.1.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase 0.55 46.0 3.01e-01 100.0% 20.0%
4026284 331.17.1.1 ↗ a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 0.55 42.0 3.04e-01 87.0% 30.5%
3708710 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.54 48.0 2.66e-01 100.0% 9.4%
4063281 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.54 41.0 3.71e-01 83.3% 80.0%
3267290 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.54 44.0 2.82e-01 100.0% 48.4%
3687101 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 45.0 2.85e-01 98.1% 22.3%
3483784 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.53 43.0 3.65e-01 100.0% 52.4%
4336488 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.53 39.0 3.65e-01 81.5% 94.3%
4861054 873.1.1.3 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Cellsynth_D 0.52 42.0 3.26e-01 100.0% 70.0%
3245433 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.52 42.0 2.67e-01 92.6% 27.6%
4949592 873.1.1.22 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF25939 0.52 41.0 3.01e-01 100.0% 61.0%
3992247 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.52 38.0 3.42e-01 85.2% 87.1%
3290541 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.51 37.0 3.53e-01 79.6% 92.3%
4647063 223.1.1.6 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.51 37.0 2.63e-01 88.9% 33.6%
4961746 304.8.1.122 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DmsR_N 0.51 37.0 2.92e-01 77.8% 40.9%
2448259 268.1.1.1 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 0.51 39.0 3.22e-01 94.4% 45.2%
164520 5.1.3.38 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mala_s_1-like 0.51 42.0 2.68e-01 100.0% 32.7%
3314422 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.50 37.0 3.49e-01 83.3% 88.6%
3744121 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.50 42.0 2.60e-01 100.0% 27.0%
D2 high residues 85-221
PDB