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MG009575.1__ATN93972.1__SEA_KUMAO_9__00009

Bact-Vir

MG009575.1__ATN93972.1__SEA_KUMAO_9__00009

Identity

Accession:
MG009575 ↗
Kingdom:
phage

Quality

90.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-77
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nctA00 3.40.50.11880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Plasmid SOS inhibition protein 0.77 70.0 5.66e-01 100.0% 59.1%
3ci0K01 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.73 51.0 4.56e-01 73.3% 58.7%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.70 58.0 4.39e-01 89.3% 59.1%
3bdrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 47.0 3.71e-01 73.3% 34.6%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.68 56.0 4.26e-01 90.7% 63.3%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.65 51.0 4.03e-01 84.0% 76.6%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.65 50.0 3.87e-01 85.3% 88.2%
5hp6A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.64 52.0 3.43e-01 89.3% 63.9%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 46.0 3.51e-01 77.3% 83.3%
3ke6B01 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.64 54.0 3.92e-01 96.0% 64.7%
3blzA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 44.0 3.75e-01 72.0% 92.7%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.63 51.0 3.51e-01 88.0% 53.1%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 53.0 3.36e-01 92.0% 52.5%
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.63 49.0 3.28e-01 85.3% 63.9%
4esqA00 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.62 52.0 3.90e-01 93.3% 41.2%
4hz9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 44.0 3.71e-01 73.3% 95.1%
1s4uX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 51.0 3.32e-01 93.3% 43.8%
6x05A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 49.0 3.12e-01 86.7% 67.1%
1nycA00 2.40.310.10 Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors 0.61 45.0 4.00e-01 78.7% 82.0%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 44.0 3.61e-01 77.3% 48.3%
3zxjA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 51.0 3.40e-01 94.7% 84.9%
4mlgG00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 51.0 3.37e-01 94.7% 91.7%
3p0lD00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 42.0 3.20e-01 73.3% 35.1%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 52.0 3.46e-01 100.0% 43.6%
2eenA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.60 46.0 3.59e-01 85.3% 42.9%
7jvhC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 48.0 3.23e-01 94.7% 62.8%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.58 47.0 3.18e-01 89.3% 89.4%
3h4zB03 3.15.10.50 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › 0.57 40.0 3.09e-01 74.7% 66.0%
2wpwC00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 42.0 2.78e-01 78.7% 32.9%
2mj7A00 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.54 42.0 3.40e-01 86.7% 44.0%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 48.0 3.75e-01 100.0% 83.2%
3zssA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 40.0 3.75e-01 78.7% 93.3%
5f7uA02 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.53 45.0 3.25e-01 94.7% 47.8%
4gyiA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 39.0 3.64e-01 80.0% 90.8%
6gszA05 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.53 40.0 3.92e-01 98.7% 76.8%
1uokA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 42.0 4.19e-01 88.0% 96.2%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.51 37.0 3.68e-01 78.7% 73.1%
1oo0A00 3.30.1560.10 Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi 0.51 38.0 3.17e-01 81.3% 99.3%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 43.0 4.06e-01 100.0% 86.3%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 41.0 4.25e-01 100.0% 97.2%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4225063 3840.1.1.2 a+b two layers › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › PerB 0.76 68.0 5.97e-01 100.0% 70.9%
3222121 7525.1.1.2 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 0.75 51.0 3.16e-01 70.7% 90.5%
3936023 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.71 50.0 3.29e-01 73.3% 52.9%
3559665 213.1.1.6 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ 0.71 48.0 4.02e-01 70.7% 41.5%
5051418 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.71 54.0 4.44e-01 81.3% 79.3%
4956931 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.71 56.0 3.40e-01 86.7% 23.7%
2549179 243.19.1.0 a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.71 49.0 4.61e-01 72.0% 80.0%
3719532 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.71 56.0 3.47e-01 84.0% 51.3%
3250629 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.70 56.0 5.06e-01 89.3% 77.1%
3939547 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 56.0 3.61e-01 88.0% 95.2%
5042381 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.68 56.0 3.55e-01 90.7% 32.6%
3330702 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.68 55.0 3.54e-01 86.7% 46.8%
4972214 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.68 56.0 3.41e-01 90.7% 86.5%
4984958 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.68 56.0 3.59e-01 90.7% 35.4%
5047049 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.67 55.0 3.25e-01 90.7% 89.3%
4969674 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.67 52.0 3.36e-01 84.0% 25.6%
3211848 5.1.4.453 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_KLHDC2_KLHL20_DRC7 0.66 53.0 3.34e-01 86.7% 41.3%
5794 295.1.1.7 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › MRP 0.65 51.0 4.03e-01 84.0% 76.6%
3501861 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 48.0 4.30e-01 78.7% 61.0%
4927378 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.65 44.0 3.77e-01 70.7% 94.3%
3402405 4.1.1.326 beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 0.64 44.0 4.81e-01 72.0% 92.1%
3408795 12.1.1.60 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Chitin_bind_4 0.64 45.0 4.87e-01 72.0% 95.1%
5009702 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.64 47.0 3.81e-01 77.3% 51.4%
3562858 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 50.0 3.04e-01 82.7% 36.7%
2048183 10.1.1.50 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Dit-like_CBM2 0.64 55.0 3.95e-01 97.3% 75.2%
3711273 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.64 44.0 3.88e-01 72.0% 78.1%
3819740 284.1.3.4 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.64 48.0 4.56e-01 81.3% 76.7%
3904009 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.64 51.0 3.29e-01 88.0% 40.0%
4002261 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 53.0 3.22e-01 94.7% 17.7%
3973592 4252.1.1.0 beta barrels › AttH-like › AttH-like › AttH-like 0.63 53.0 3.98e-01 94.7% 78.4%
3812869 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.63 53.0 4.86e-01 94.7% 82.0%
3295575 284.1.3.2 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.63 46.0 4.26e-01 80.0% 68.0%
3634325 5.1.4.244 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_2nd 0.62 52.0 3.48e-01 93.3% 55.6%
1094910 243.1.1.21 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF3828 0.62 44.0 3.71e-01 73.3% 95.1%
4889354 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.62 51.0 3.25e-01 92.0% 50.1%
3363058 5.1.8.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.62 51.0 3.70e-01 93.3% 61.3%
3438347 5.1.5.63 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1618 0.62 48.0 3.98e-01 86.7% 98.6%
3802306 284.1.2.0 a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases 0.61 50.0 4.67e-01 90.7% 82.1%
5032559 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 47.0 4.45e-01 82.7% 95.6%
5079413 5.1.3.272 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SBBP 0.61 50.0 3.52e-01 94.7% 43.0%
3318685 284.1.3.2 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C 0.61 50.0 4.47e-01 90.7% 81.0%
3420430 511.1.1.1 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › HSP70 0.60 42.0 3.49e-01 73.3% 69.6%
4968725 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.60 49.0 3.22e-01 90.7% 48.2%
3762480 11.1.5.83 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › BTBD16_C 0.60 51.0 4.30e-01 96.0% 95.4%
5074806 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.59 51.0 3.62e-01 98.7% 44.9%
4890816 5.1.2.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.59 52.0 3.49e-01 100.0% 41.9%
3827251 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.59 46.0 3.07e-01 89.3% 39.1%
5030390 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.58 39.0 3.75e-01 72.0% 58.4%
3707133 12.3.1.19 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.58 52.0 3.76e-01 100.0% 93.8%
3371196 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.57 48.0 3.28e-01 100.0% 68.0%
4279265 2004.1.1.481 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_29 0.56 49.0 3.06e-01 96.0% 30.5%
3973778 3982.1.1.0 a+b complex topology › lantibiotic self-resistance lipoprotein MlbQ › lantibiotic self-resistance lipoprotein MlbQ › lantibiotic self-resistance lipoprotein MlbQ 0.55 42.0 3.83e-01 81.3% 94.0%
3788193 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.55 47.0 3.76e-01 97.3% 56.1%
2639349 2004.1.1.480 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 0.54 37.0 3.20e-01 72.0% 87.8%
3251788 9.1.1.37 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF6314 0.54 44.0 3.50e-01 92.0% 61.2%
3764049 2004.1.1.442 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 0.54 42.0 2.83e-01 85.3% 39.0%
3843214 2004.1.1.442 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 0.53 41.0 2.50e-01 85.3% 21.3%
3849007 2004.1.1.480 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 0.53 41.0 2.48e-01 85.3% 15.9%
3937752 2004.1.1.615 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_23, AAA_29 0.53 41.0 2.51e-01 85.3% 22.1%
3517916 2004.1.1.480 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 0.52 40.0 2.56e-01 85.3% 25.8%