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MG009575.1__ATN93983.1__SEA_KUMAO_20__00020

Bact-Vir

MG009575.1__ATN93983.1__SEA_KUMAO_20__00020

Identity

Accession:
MG009575 ↗
Kingdom:
phage

Quality

88.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vilmaviridae› Kumaovirus› Mycobacterium_phage_Kumao

TaxID: 2041344

Cluster

View cluster (14 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-114
PDB
Domain cluster: rep: KM083128.1__AII28157.1__PBI_SPARKY_9__00009__D11-121
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 50.0 4.07e-01 100.0% 46.6%
2rrnA01 3.30.70.2040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 42.0 4.33e-01 93.1% 75.9%
1pu1A00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.60 47.0 4.69e-01 100.0% 82.4%
3b8mC01 3.30.1890.10 Alpha Beta › 2-Layer Sandwich › Bacterial polysaccharide co-polymerase-like › FepE-like 0.57 49.0 4.18e-01 98.9% 60.9%
4k1pE00 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.54 48.0 3.26e-01 100.0% 49.8%
4wksC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.52 33.0 3.55e-01 73.6% 74.7%
6kguA01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.51 37.0 3.81e-01 98.9% 79.1%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 45.0 3.44e-01 100.0% 76.0%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4553924 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.65 53.0 3.50e-01 89.7% 37.1%
3705771 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.62 32.0 3.36e-01 98.9% 54.4%
3280874 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 48.0 3.24e-01 88.5% 35.8%
3835200 3556.1.1.0 ↗ a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 0.61 54.0 4.67e-01 96.6% 71.5%
5078624 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.61 49.0 4.60e-01 100.0% 71.4%
4679606 327.10.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related 0.60 46.0 4.61e-01 94.3% 80.0%
3880966 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.60 42.0 4.48e-01 97.7% 85.3%
3740624 101.1.2.111 ↗ alpha arrays › HTH › HTH › winged helix domain › RQC 0.60 35.0 3.14e-01 97.7% 40.8%
3717759 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.59 52.0 4.61e-01 97.7% 84.0%
3486254 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.58 40.0 4.18e-01 97.7% 78.8%
3229321 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.58 34.0 2.46e-01 95.4% 20.0%
3682673 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 40.0 2.37e-01 72.4% 22.6%
3591474 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.57 48.0 3.66e-01 95.4% 90.0%
5049819 309.1.1.14 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › MZB 0.55 48.0 3.86e-01 97.7% 67.4%
3199118 3751.1.1.1 ↗ extended segments › Antiviral helicase Ski2 N-terminal extended region › Antiviral helicase Ski2 N-terminal extended region › Antiviral helicase Ski2 N-terminal extended region › Ski2_N 0.55 24.0 1.89e-01 100.0% 16.8%
5027134 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.55 38.0 3.42e-01 86.2% 50.4%
3494714 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.55 36.0 3.91e-01 83.9% 84.3%
3272379 327.5.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins 0.54 45.0 4.53e-01 100.0% 91.0%
3948415 605.1.1.127 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › TraG_N 0.53 45.0 3.40e-01 98.9% 58.3%
3694279 810.1.1.1 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › ChaC 0.52 43.0 3.80e-01 93.1% 70.4%
4567918 273.1.1.0 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.52 37.0 3.27e-01 74.7% 54.4%
3684953 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.51 41.0 2.65e-01 86.2% 47.3%
3194655 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.51 35.0 2.90e-01 71.3% 82.1%
3214852 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.50 43.0 2.94e-01 100.0% 85.3%