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MG009575.1__ATN94035.1__SEA_KUMAO_72__00072

Bact-Vir

MG009575.1__ATN94035.1__SEA_KUMAO_72__00072

Identity

Accession:
MG009575 ↗
Kingdom:
phage

Quality

78.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vilmaviridae› Kumaovirus› Mycobacterium_phage_Kumao

TaxID: 2041344

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-143
PDB
Domain cluster: rep: MG674163.1__AUG85482.1__SHab15497_00040__00036__D15-126
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18909.6 best dGTP_diPhyd_N 80.4 1.10e-22 93.2% 82.8%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yqzA02 1.10.8.900 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.69 33.0 4.20e-01 90.7% 77.9%
7odyC01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.62 34.0 3.82e-01 81.4% 67.4%
2icwG02 1.10.10.530 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 0.53 33.0 3.67e-01 89.0% 80.9%
3zheB02 1.20.190.60 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 0.53 37.0 3.23e-01 71.2% 72.4%
6cy5A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.52 28.0 3.23e-01 80.5% 69.7%
3wiwA00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.51 41.0 2.95e-01 86.4% 93.5%
6xm1A02 3.90.830.10 Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a 0.50 36.0 3.68e-01 89.0% 77.0%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3462495 109.4.1.213 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FancD2 0.58 40.0 2.38e-01 70.3% 31.2%
3723619 5051.1.1.10 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.55 45.0 2.98e-01 89.0% 47.6%
5055654 218.2.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.55 39.0 3.67e-01 90.7% 60.0%
5038938 218.2.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.55 39.0 3.65e-01 90.7% 60.0%
3204866 109.54.1.12 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › PF28770 0.54 40.0 2.91e-01 77.1% 55.3%
4312627 218.2.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.54 39.0 3.60e-01 90.7% 58.2%
4536854 218.2.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.54 39.0 3.77e-01 90.7% 66.9%
5023481 4044.1.1.0 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins 0.53 42.0 3.91e-01 84.7% 86.0%
3601843 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 40.0 2.54e-01 80.5% 36.2%
1954739 320.4.1.5 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain › Gasdermin_C 0.52 41.0 3.70e-01 89.0% 60.9%
4932801 218.2.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.51 39.0 3.40e-01 79.7% 62.3%
5056212 1079.1.1.8 ↗ alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › LysE 0.50 39.0 3.38e-01 84.7% 66.2%
D2 high residues 172-229
PDB