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MG009575.1__ATN94039.1__SEA_KUMAO_76__00076
Bact-VirMG009575.1__ATN94039.1__SEA_KUMAO_76__00076
Identity
- Accession:
- MG009575 ↗
- Kingdom:
- phage
Quality
92.0
mean pLDDT
Taxonomy
TaxID: 2041344
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-76
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zbtA01 | 6.10.140.1950 | Special › Helix non-globular › Helix Hairpins › | 0.80 | 62.0 | 5.43e-01 | 83.9% | 57.8% |
| 2b0hA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.79 | 63.0 | 4.81e-01 | 87.5% | 44.5% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.79 | 63.0 | 5.47e-01 | 87.5% | 61.2% |
| 5h5mA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.77 | 60.0 | 4.53e-01 | 83.9% | 40.0% |
| 3tklB01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 60.0 | 5.86e-01 | 87.5% | 91.9% |
| 1w99A01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.76 | 68.0 | 4.75e-01 | 100.0% | 69.9% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.75 | 57.0 | 5.97e-01 | 85.7% | 93.9% |
| 1dtoA01 | 1.10.287.30 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 | 0.75 | 66.0 | 5.43e-01 | 100.0% | 63.7% |
| 1skvA00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.75 | 55.0 | 5.26e-01 | 87.5% | 68.8% |
| 2xzmO02 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.74 | 63.0 | 5.82e-01 | 92.9% | 82.9% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.74 | 61.0 | 4.81e-01 | 92.9% | 74.4% |
| 5b1oA00 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.72 | 54.0 | 5.21e-01 | 82.1% | 78.5% |
| 6z0fA02 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.72 | 55.0 | 3.97e-01 | 85.7% | 50.0% |
| 4jvyB00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.72 | 60.0 | 4.16e-01 | 94.6% | 49.5% |
| 2jexA01 | 1.10.287.30 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 | 0.71 | 59.0 | 5.04e-01 | 96.4% | 69.8% |
| 7k18A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.71 | 60.0 | 4.64e-01 | 100.0% | 61.9% |
| 1cxzB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.71 | 53.0 | 4.64e-01 | 82.1% | 82.6% |
| 3cwzB01 | 1.20.58.900 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain | 0.71 | 62.0 | 4.59e-01 | 100.0% | 45.2% |
| 1tjlA00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.69 | 55.0 | 4.06e-01 | 87.5% | 34.5% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 52.0 | 5.22e-01 | 87.5% | 82.8% |
| 1yq1A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.67 | 55.0 | 4.48e-01 | 94.6% | 80.4% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 56.0 | 4.82e-01 | 96.4% | 83.7% |
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.67 | 57.0 | 4.58e-01 | 100.0% | 65.8% |
| 3qf7A02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.67 | 52.0 | 5.05e-01 | 89.3% | 81.0% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 49.0 | 4.52e-01 | 82.1% | 64.9% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.65 | 50.0 | 4.96e-01 | 87.5% | 87.9% |
| 1wdzA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.65 | 51.0 | 3.42e-01 | 87.5% | 22.1% |
| 6a95A01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.64 | 53.0 | 4.25e-01 | 100.0% | 59.5% |
| 6xkyA01 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.64 | 53.0 | 3.82e-01 | 100.0% | 50.3% |
| 2cazC00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.63 | 49.0 | 4.78e-01 | 87.5% | 81.2% |
| 3h1nA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.62 | 51.0 | 4.18e-01 | 100.0% | 84.2% |
| 3ce9A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.61 | 47.0 | 3.33e-01 | 87.5% | 27.3% |
| 7dukB01 | 1.10.287.610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.61 | 45.0 | 4.84e-01 | 82.1% | 97.8% |
| 3k2nA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.61 | 45.0 | 3.33e-01 | 85.7% | 88.1% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 43.0 | 3.64e-01 | 92.9% | 79.8% |
| 7z67A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 42.0 | 2.85e-01 | 96.4% | 23.9% |
| 2z16B01 | 1.20.91.10 | Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Influenza matrix M1, N-terminal subdomain 1 | 0.50 | 43.0 | 3.95e-01 | 100.0% | 98.7% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4089826 | 622.1.1.33 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › T3SS_needle_F | 0.86 | 70.0 | 5.98e-01 | 87.5% | 60.0% |
| 3544424 | 109.4.1.513 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CCDC142 | 0.84 | 67.0 | 4.06e-01 | 85.7% | 15.9% |
| 4211148 | 4207.1.1.6 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › Med10 | 0.82 | 67.0 | 4.94e-01 | 87.5% | 38.5% |
| 3172138 | 3846.1.1.0 ↗ | alpha bundles › IcmR › IcmR › IcmR | 0.80 | 63.0 | 6.00e-01 | 85.7% | 73.8% |
| 3382794 | 304.9.1.7 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › XS | 0.78 | 61.0 | 3.80e-01 | 85.7% | 16.3% |
| 4600185 | 3602.1.1.15 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › DUF444 | 0.77 | 62.0 | 5.61e-01 | 87.5% | 72.0% |
| 3896686 | 192.8.1.36 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › M_domain | 0.77 | 61.0 | 5.03e-01 | 87.5% | 51.0% |
| 4142309 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.76 | 61.0 | 4.42e-01 | 89.3% | 32.5% |
| 3783020 | 4207.1.1.0 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) | 0.76 | 60.0 | 4.60e-01 | 87.5% | 39.2% |
| 2055367 | 650.1.1.3 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › HsbA | 0.76 | 59.0 | 5.49e-01 | 85.7% | 72.9% |
| 4385616 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.76 | 59.0 | 4.62e-01 | 85.7% | 44.2% |
| 3820519 | 109.4.1.84 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › API5 | 0.75 | 66.0 | 3.95e-01 | 100.0% | 17.6% |
| 3222169 | 601.33.1.10 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › DUF19 | 0.75 | 64.0 | 4.70e-01 | 100.0% | 38.4% |
| 3410365 | 2004.1.1.184 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 | 0.74 | 66.0 | 3.96e-01 | 100.0% | 21.3% |
| 2570270 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.74 | 58.0 | 5.94e-01 | 85.7% | 94.2% |
| 3545387 | 3602.1.1.0 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain | 0.74 | 58.0 | 4.69e-01 | 87.5% | 46.4% |
| 4953126 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.73 | 60.0 | 3.96e-01 | 94.6% | 80.3% |
| 5059993 | 601.33.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain | 0.73 | 60.0 | 5.14e-01 | 98.2% | 61.6% |
| 3449084 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.71 | 55.0 | 4.50e-01 | 85.7% | 50.5% |
| 3398414 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.71 | 51.0 | 5.44e-01 | 82.1% | 97.8% |
| 3505608 | 192.29.1.1 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom | 0.71 | 54.0 | 5.02e-01 | 87.5% | 74.7% |
| 3915878 | 3922.1.1.65 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PLC-beta_C | 0.71 | 55.0 | 3.70e-01 | 85.7% | 24.3% |
| 3242821 | 192.10.1.0 ↗ | alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain | 0.70 | 56.0 | 5.51e-01 | 91.1% | 83.3% |
| 3581757 | 11.12.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD,Neur_chan_memb | 0.70 | 55.0 | 3.70e-01 | 89.3% | 25.3% |
| 4030233 | 603.1.1.6 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin_2 | 0.69 | 56.0 | 3.91e-01 | 92.9% | 81.5% |
| 3931888 | 633.1.1.1 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain | 0.69 | 53.0 | 4.20e-01 | 87.5% | 87.2% |
| 3520817 | 109.4.1.93 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TAF6_C | 0.69 | 57.0 | 3.65e-01 | 96.4% | 27.2% |
| 3305069 | 605.1.1.92 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Myb_CC_LHEQLE | 0.67 | 53.0 | 4.93e-01 | 85.7% | 72.9% |
| 3686594 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.67 | 57.0 | 5.16e-01 | 100.0% | 81.2% |
| 3230196 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 54.0 | 4.33e-01 | 96.4% | 53.3% |
| 3313517 | 7013.1.1.1 ↗ | alpha bundles › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Ribosome assembly factor Efg1-like › Efg1 | 0.65 | 52.0 | 3.98e-01 | 96.4% | 56.0% |
| 3459724 | 604.1.1.102 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF8324 | 0.65 | 55.0 | 4.47e-01 | 100.0% | 80.0% |
| 4373815 | 1008.1.1.96 ↗ | alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › Spore_III_AF | 0.64 | 49.0 | 4.69e-01 | 83.9% | 72.3% |
| 4589656 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.64 | 48.0 | 3.71e-01 | 87.5% | 35.2% |
| 3948171 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.62 | 54.0 | 4.39e-01 | 100.0% | 66.4% |
| 3650360 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 46.0 | 3.60e-01 | 87.5% | 84.2% |