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MG018927.1__ATW58043.1__CNR34_00110__00108

Bact-Vir

MG018927.1__ATW58043.1__CNR34_00110__00108

Identity

Accession:
MG018927 ↗
Kingdom:
phage

Quality

73.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-116
PDB
D2 high residues 120-200
PDB
Domain cluster: representative
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 40.0 4.43e-01 87.7% 78.1%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 38.0 4.39e-01 81.5% 87.5%
4l5tB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 51.0 4.96e-01 100.0% 79.1%
3itwA02 3.30.720.110 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.62 29.0 3.43e-01 87.7% 62.5%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 49.0 5.10e-01 100.0% 95.9%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 37.0 4.17e-01 74.1% 80.3%
3fvqA03 2.40.50.470 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 35.0 4.03e-01 85.2% 79.3%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 49.0 4.97e-01 100.0% 91.1%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 44.0 4.48e-01 100.0% 80.0%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.60 32.0 3.68e-01 95.1% 71.4%
1v1pB02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 47.0 4.86e-01 100.0% 94.6%
3d31A03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 39.0 4.14e-01 87.7% 77.5%
1uirA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 30.0 3.60e-01 95.1% 75.0%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 38.0 4.05e-01 85.2% 76.1%
1jb7A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 49.0 4.34e-01 100.0% 63.8%
4bwgD00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 49.0 4.68e-01 96.3% 87.6%
3rn5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 47.0 4.58e-01 100.0% 79.3%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 31.0 3.51e-01 95.1% 69.5%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 35.0 4.28e-01 77.8% 98.0%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 50.0 4.78e-01 100.0% 89.8%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 30.0 3.35e-01 97.5% 60.9%
2b2cA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 31.0 3.39e-01 96.3% 64.1%
2ivwA01 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 4.24e-01 77.8% 100.0%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 28.0 3.47e-01 96.3% 76.5%
3u4zA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 46.0 4.24e-01 100.0% 67.9%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 40.0 4.30e-01 87.7% 89.6%
1eujA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 46.0 3.68e-01 98.8% 45.1%
3wasA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 42.0 2.72e-01 81.5% 76.9%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 45.0 3.93e-01 92.6% 94.6%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 48.0 4.43e-01 100.0% 79.2%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 31.0 3.62e-01 97.5% 82.7%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 30.0 3.66e-01 97.5% 84.3%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 32.0 3.69e-01 97.5% 82.1%
5jpnC02 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 49.0 3.92e-01 98.8% 54.1%
6aqgA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 46.0 3.91e-01 100.0% 54.6%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 36.0 3.18e-01 98.8% 47.4%
1h6hA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 46.0 3.83e-01 92.6% 84.6%
1reoA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 34.0 2.86e-01 77.8% 33.8%
4me3A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 48.0 4.55e-01 100.0% 81.4%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 46.0 3.96e-01 93.8% 96.9%
3kf6A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 47.0 3.98e-01 100.0% 60.3%
1noyA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.53 36.0 3.18e-01 72.8% 84.3%
4glaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 45.0 4.40e-01 100.0% 87.6%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.53 37.0 3.97e-01 96.3% 87.1%
3amuA02 2.40.50.1010 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 46.0 3.93e-01 100.0% 62.5%
7k98B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 45.0 4.01e-01 95.1% 66.7%
3bdlA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 47.0 3.70e-01 98.8% 62.0%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.52 43.0 3.43e-01 92.6% 66.5%
3iayA01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 46.0 4.34e-01 100.0% 81.6%
1zylA01 3.30.200.70 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.52 35.0 3.73e-01 95.1% 80.0%
3hkzG00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 46.0 4.16e-01 98.8% 95.6%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 3.53e-01 77.8% 63.7%
1zswA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 32.0 2.47e-01 91.4% 27.5%
3h3hB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 35.0 3.11e-01 96.3% 48.3%
5c7qB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.51 34.0 2.71e-01 70.4% 67.2%
2pi2D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 46.0 3.96e-01 100.0% 74.8%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.50 39.0 3.35e-01 85.2% 73.3%
1kmdA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.50 42.0 3.76e-01 93.8% 92.3%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4505316 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 39.0 4.50e-01 72.8% 71.7%
3940607 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 43.0 4.91e-01 74.1% 83.1%
4311691 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.70 46.0 3.84e-01 87.7% 40.0%
4946191 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 56.0 5.69e-01 100.0% 93.6%
4646663 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.67 44.0 3.72e-01 87.7% 40.7%
4052370 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 45.0 4.99e-01 97.5% 90.8%
3242941 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 50.0 5.38e-01 100.0% 95.7%
4927935 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 51.0 5.34e-01 100.0% 97.3%
3620698 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.62 51.0 4.83e-01 100.0% 75.8%
4528717 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.61 42.0 4.53e-01 95.1% 84.1%
3839111 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 51.0 4.91e-01 100.0% 82.2%
3214705 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.60 45.0 3.99e-01 81.5% 86.7%
3165957 3454.1.1.0 beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.60 44.0 4.58e-01 77.8% 98.7%
3826195 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.59 50.0 4.70e-01 100.0% 75.0%
4606688 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.59 41.0 4.26e-01 95.1% 78.7%
4983389 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.58 40.0 4.36e-01 85.2% 87.7%
3226147 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.58 50.0 4.92e-01 100.0% 89.4%
3979396 3454.1.1.4 beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › HofP 0.57 40.0 4.04e-01 72.8% 90.0%
1513837 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.57 37.0 4.10e-01 86.4% 88.3%
5078248 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.56 40.0 4.19e-01 92.6% 85.7%
419 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.56 40.0 4.13e-01 87.7% 78.9%
3742662 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 49.0 4.36e-01 100.0% 85.0%
3172086 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 48.0 4.29e-01 100.0% 67.8%
5043745 2.1.1.287 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Zn_ribbon_TiaS 0.56 50.0 3.85e-01 100.0% 50.6%
3389015 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 47.0 4.43e-01 100.0% 76.0%
4241924 4.1.1.93 beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.55 38.0 3.76e-01 85.2% 65.6%
4022461 2.1.1.52 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 0.55 49.0 3.68e-01 100.0% 49.3%
4281449 2.4.1.3 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.55 37.0 3.25e-01 88.9% 44.5%
3239000 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 49.0 4.21e-01 100.0% 76.9%
4049072 2.4.1.6 beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.54 43.0 3.90e-01 86.4% 84.5%
4984320 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.53 48.0 4.10e-01 98.8% 92.3%
3963148 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.53 45.0 4.21e-01 100.0% 76.0%
4960303 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 41.0 3.92e-01 84.0% 95.8%
4927010 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.53 42.0 3.62e-01 85.2% 85.6%
4600473 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.52 38.0 3.30e-01 95.1% 48.1%
3967545 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.52 46.0 3.70e-01 100.0% 82.5%
3985171 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.52 45.0 3.80e-01 100.0% 95.7%
4443040 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.51 41.0 3.84e-01 87.7% 80.8%
5063316 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 44.0 3.85e-01 100.0% 76.2%
4951344 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.51 41.0 3.68e-01 88.9% 74.8%
3733247 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 39.0 2.75e-01 82.7% 84.7%
5042671 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.50 41.0 3.61e-01 88.9% 72.4%
4289288 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.50 39.0 3.35e-01 82.7% 99.2%