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MG018930.1__ATW58376.1__CNR37_00169__00156

Bact-Vir

MG018930.1__ATW58376.1__CNR37_00169__00156

Identity

Accession:
MG018930 ↗
Kingdom:
phage

Quality

96.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vandenendeviridae› Ventosusvirus› Pseudomonas_phage_ventosus

TaxID: 2048980

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-103
PDB
Domain cluster: rep: KX822733.1__APC44377.1__X__00110__D1-87
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24027.2 best DUF7338 71.0 1.60e-19 99.0% 50.0%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5dqqA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 39.0 3.61e-01 100.0% 56.1%
3jx9A00 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.56 40.0 3.46e-01 75.7% 100.0%
1vyiA00 1.20.120.820 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Phosphoprotein, C-terminal domain 0.55 32.0 3.21e-01 93.2% 53.2%
3e9sA02 1.10.8.1190 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain 0.55 41.0 3.94e-01 81.6% 67.7%
4byfC01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.54 40.0 4.22e-01 93.2% 91.0%
1lkxC03 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.53 41.0 4.11e-01 93.2% 81.3%
4p16A02 1.10.8.1190 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain 0.53 41.0 3.84e-01 83.5% 67.7%
6ui4A01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.52 39.0 4.21e-01 83.5% 93.2%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3585613 5054.1.1.59 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 0.59 33.0 2.65e-01 100.0% 26.0%
5049161 177.1.1.0 ↗ alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease 0.56 39.0 3.09e-01 70.9% 47.1%
3499106 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.55 36.0 2.44e-01 100.0% 16.7%
3334969 314.1.1.15 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › APO_RNA-bind 0.55 40.0 3.20e-01 95.1% 40.2%
3479755 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 46.0 2.95e-01 97.1% 57.7%
3575665 2004.1.1.17 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.52 45.0 2.92e-01 97.1% 55.2%
3629471 5054.1.1.2 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.51 37.0 2.87e-01 100.0% 36.2%
3863157 109.4.1.423 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PP4R3 0.51 39.0 2.45e-01 79.6% 38.6%
D2 high residues 108-191
PDB
Domain cluster: rep: MW175491.1__QPB10475.1__PN09_054__00054__D42-125
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24027.2 best DUF7338 42.3 9.50e-11 100.0% 42.8%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ifdF00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.62 48.0 3.53e-01 82.1% 68.5%
4ienA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 41.0 3.34e-01 79.8% 89.0%
1ydwA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 41.0 3.08e-01 82.1% 70.7%
2wjqA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.54 47.0 3.55e-01 97.6% 49.3%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.53 36.0 4.06e-01 85.7% 95.2%
1z94B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 41.0 3.38e-01 82.1% 71.3%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.51 39.0 3.14e-01 83.3% 41.0%
1jpdX01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 42.0 4.00e-01 88.1% 92.9%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.50 34.0 3.37e-01 70.2% 66.7%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.50 44.0 3.86e-01 96.4% 80.5%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4670128 5087.3.1.1 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht 0.59 40.0 2.96e-01 70.2% 89.3%
3965583 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.53 46.0 3.84e-01 92.9% 92.9%
3981106 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.53 44.0 3.67e-01 92.9% 66.0%
3894826 9.13.1.0 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.52 40.0 3.71e-01 83.3% 89.1%
4113088 5084.1.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OmpA_membrane 0.52 42.0 3.17e-01 86.9% 77.3%
5002628 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 35.0 3.32e-01 70.2% 74.0%