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MG018930.1__ATW58386.1__CNR37_00179__00166

Bact-Vir

MG018930.1__ATW58386.1__CNR37_00179__00166

Identity

Accession:
MG018930 ↗
Kingdom:
phage

Quality

53.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vandenendeviridae› Ventosusvirus› Pseudomonas_phage_ventosus

TaxID: 2048980

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 258-375_432-465
PDB
Domain cluster: rep: MN698245.1__QGZ18159.1__HTVC111P_gp46__00046__D46-220
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20155.5 best TMP_3 47.7 2.20e-12 84.2% 57.3%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ezcB00 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.64 44.0 3.40e-01 70.4% 81.2%
3m1tA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.63 48.0 3.97e-01 79.6% 83.6%
2x49A03 1.10.8.540 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › FHIPEP family, domain 3 0.59 33.0 4.07e-01 77.6% 90.0%
1gzmA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.56 44.0 3.45e-01 82.2% 84.1%
6k41R00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.55 43.0 3.69e-01 82.2% 95.5%
4rflA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.53 38.0 3.44e-01 72.4% 100.0%
7w5lA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.52 38.0 3.18e-01 75.7% 68.1%
1grlB01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.50 41.0 3.54e-01 88.2% 79.1%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3963765 159.1.2.5 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › TMP_3 0.84 75.0 6.88e-01 94.1% 100.0%
4032310 159.1.2.6 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.70 62.0 6.25e-01 95.4% 100.0%
4961860 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 39.0 4.13e-01 76.3% 62.1%
3343869 5001.1.1.122 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › PF27754 0.60 43.0 3.41e-01 72.4% 67.1%
3334625 109.4.1.2217 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26767 0.50 39.0 3.30e-01 81.6% 68.0%
D2 medium residues 127-189_714-775
PDB
D3 medium residues 376-431
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5z9sB01 3.20.20.300 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain 0.61 50.0 3.15e-01 98.2% 91.0%
3cl3A01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.60 47.0 4.27e-01 94.6% 69.0%
1q90D02 1.10.287.980 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › plastocyanin oxidoreductase 0.60 47.0 4.10e-01 91.1% 76.3%
5h0pA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 41.0 3.41e-01 75.0% 69.6%
1on2A02 1.10.60.10 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain 0.57 44.0 4.32e-01 98.2% 81.0%
1oksA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.56 42.0 4.31e-01 96.4% 88.7%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 43.0 4.12e-01 87.5% 95.5%
1lp1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.56 41.0 4.14e-01 100.0% 80.0%
3cvvA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.50 43.0 3.31e-01 98.2% 64.9%
1kf6D00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.50 41.0 3.37e-01 100.0% 83.2%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3628378 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.58 37.0 2.72e-01 85.7% 21.8%
3342406 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.57 39.0 3.31e-01 71.4% 44.0%
4274627 101.1.1.266 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.56 33.0 3.33e-01 87.5% 55.0%
5060063 4133.1.1.0 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.55 38.0 3.60e-01 73.2% 74.3%
4449315 608.1.1.1 ↗ alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD 0.54 38.0 3.19e-01 73.2% 46.0%
4878020 110.1.1.3 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › DED 0.54 42.0 3.72e-01 94.6% 60.6%
4936475 103.4.1.31 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › PF30410 0.51 42.0 4.06e-01 98.2% 92.3%
3272285 2003.1.4.9 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › SIR2_2 0.50 42.0 2.74e-01 100.0% 20.0%