Back to structures

MG020111.1__ATN94212.1__Lb_53__00053

Bact-Vir

MG020111.1__ATN94212.1__Lb_53__00053

Identity

Accession:
MG020111 ↗
Kingdom:
phage

Quality

89.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-132
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1m9sA04 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.83 66.0 6.92e-01 100.0% 91.9%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 46.0 5.13e-01 92.7% 80.0%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 38.0 4.42e-01 88.5% 84.8%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 39.0 4.29e-01 93.8% 81.3%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.61 38.0 3.87e-01 94.8% 63.2%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 39.0 3.43e-01 97.9% 48.6%
2k3aA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.56 33.0 3.27e-01 92.7% 55.0%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 34.0 3.99e-01 81.2% 90.6%
5egwA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 48.0 3.26e-01 97.9% 57.3%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.53 42.0 4.10e-01 95.8% 78.8%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 39.0 3.64e-01 79.2% 81.6%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 44.0 3.08e-01 90.6% 84.2%
2vxtI00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 45.0 3.85e-01 97.9% 99.4%
3s6pA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.51 38.0 3.40e-01 100.0% 54.2%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 40.0 3.70e-01 100.0% 66.7%
1dhkB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 3.52e-01 97.9% 65.1%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4067152 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.99 97.0 9.31e-01 100.0% 94.3%
3564972 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 46.0 5.30e-01 93.8% 77.1%
4261760 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.78 58.0 5.86e-01 93.8% 77.9%
3879132 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 45.0 5.06e-01 92.7% 85.3%
3585214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 35.0 3.54e-01 90.6% 51.0%
3285829 4.1.1.425 beta barrels › SH3 › SH3 › SH3 › RNHCP 0.64 39.0 3.79e-01 83.3% 54.3%
3434623 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.57 52.0 4.02e-01 99.0% 94.7%
3737835 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.57 33.0 3.34e-01 94.8% 54.0%
5071337 2484.1.1.49 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.54 30.0 2.93e-01 88.5% 47.6%
3598995 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.53 44.0 3.05e-01 90.6% 83.0%
3595257 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.53 44.0 3.06e-01 90.6% 84.8%
2527953 5.1.2.10 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF1861 0.52 44.0 3.03e-01 90.6% 82.7%
3472026 220.1.1.27 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.52 41.0 3.83e-01 85.4% 80.8%
4039860 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.52 36.0 3.41e-01 70.8% 89.5%
4044884 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.51 40.0 3.26e-01 84.4% 59.5%
D2 high residues 247-321
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zxhA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.63 43.0 4.78e-01 93.3% 96.4%
2ns5A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 55.0 5.30e-01 100.0% 96.5%
2kt7A01 3.10.20.320 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Putative peptidoglycan bound protein (lpxtg motif) 0.60 47.0 4.52e-01 100.0% 75.3%
1l4dB00 3.10.20.180 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 52.0 4.59e-01 100.0% 95.5%
6kykA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 50.0 4.86e-01 94.7% 98.8%
6jl3A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 50.0 5.08e-01 96.0% 95.9%
2w4eA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.57 50.0 4.12e-01 98.7% 65.0%
1v5oA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 50.0 4.55e-01 100.0% 77.5%
2qjlA00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.57 48.0 4.44e-01 96.0% 93.9%
1yn3A00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 47.0 4.36e-01 93.3% 95.9%
2cr5A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 48.0 4.77e-01 94.7% 91.3%
1se9A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 49.0 4.51e-01 100.0% 90.1%
2kanA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 48.0 4.87e-01 96.0% 97.3%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.56 36.0 3.97e-01 98.7% 87.5%
3u7zA00 2.170.130.30 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › 0.56 46.0 4.30e-01 94.7% 92.8%
2vh2B01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.55 43.0 4.44e-01 97.3% 94.4%
2kd0A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 45.0 4.67e-01 94.7% 98.6%
3rfzB04 2.60.40.2610 Mainly Beta › Sandwich › Immunoglobulin-like › Outer membrane usher protein FimD, plug domain 0.55 47.0 4.48e-01 98.7% 85.7%
3gg6A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.54 48.0 3.91e-01 100.0% 58.3%
4bfrB02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 46.0 3.92e-01 96.0% 64.1%
1ef1A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 45.0 4.52e-01 96.0% 98.7%
2kjrA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 45.0 4.48e-01 94.7% 97.5%
2o5fB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.54 46.0 3.68e-01 98.7% 57.4%
1wghA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 47.0 4.56e-01 100.0% 100.0%
2d3aA01 3.10.20.70 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain 0.53 44.0 4.04e-01 94.7% 81.2%
2dafA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 47.0 4.71e-01 100.0% 100.0%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 44.0 4.42e-01 96.0% 98.7%
2y5pA00 2.60.40.4270 Mainly Beta › Sandwich › Immunoglobulin-like › Listeria-Bacteroides repeat domain 0.53 43.0 4.37e-01 100.0% 95.8%
3hhjB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.53 46.0 3.89e-01 100.0% 69.5%
3h95A01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.53 48.0 3.96e-01 100.0% 62.6%
6u7tA03 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.53 47.0 4.01e-01 100.0% 67.8%
5ffiE00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.53 43.0 3.98e-01 93.3% 99.0%
1tkeA01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.53 39.0 4.18e-01 94.7% 93.8%
1wmhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 43.0 4.27e-01 96.0% 98.8%
3fjyA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 45.0 3.61e-01 100.0% 62.3%
1nqzA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 45.0 3.54e-01 100.0% 51.5%
3to7A01 3.30.60.60 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › N-acetyl transferase-like 0.52 28.0 3.10e-01 94.7% 64.2%
2qdfA03 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.52 43.0 4.29e-01 98.7% 94.8%
1a70A00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.51 42.0 3.93e-01 94.7% 91.8%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4492767 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.87 83.0 7.90e-01 100.0% 91.8%
4982816 221.1.1.75 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SAMP2 0.61 48.0 5.01e-01 97.3% 94.2%
3610353 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 54.0 4.82e-01 100.0% 81.0%
6102 221.1.1.15 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Staphylokinase 0.59 52.0 4.59e-01 100.0% 95.5%
3234182 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.58 50.0 4.90e-01 100.0% 100.0%
5069323 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 37.0 4.24e-01 98.7% 100.0%
4562405 221.1.1.23 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF348 0.57 40.0 4.39e-01 94.7% 100.0%
1866805 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 50.0 4.94e-01 97.3% 95.0%
3213738 192.29.1.117 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Ima1_N 0.57 28.0 3.59e-01 74.7% 94.3%
3384326 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 46.0 4.57e-01 96.0% 83.7%
4100709 221.1.1.21 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ub-RnfH 0.57 48.0 4.50e-01 96.0% 75.8%
3855823 221.1.1.155 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiq_ISOC1_N 0.57 48.0 4.76e-01 94.7% 91.3%
3932747 221.1.1.36 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.56 48.0 4.67e-01 94.7% 98.8%
4954981 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.56 50.0 3.85e-01 100.0% 52.4%
3732488 221.1.1.178 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Sde2_N_Ubi_yeast 0.56 48.0 4.38e-01 96.0% 97.0%
3918223 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 47.0 4.77e-01 97.3% 100.0%
4478749 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 49.0 4.71e-01 100.0% 97.6%
3768786 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 49.0 4.83e-01 100.0% 97.5%
1731819 3121.1.1.1 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.55 46.0 4.44e-01 97.3% 96.5%
3970788 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.54 47.0 3.73e-01 100.0% 54.9%
4141631 7089.1.1.4 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › FlgI 0.54 35.0 3.51e-01 84.0% 63.3%
3785051 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 45.0 4.40e-01 97.3% 94.1%
3788334 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 48.0 3.95e-01 100.0% 90.4%
4311385 101.1.2.553 alpha arrays › HTH › HTH › winged helix domain › FlgI 0.53 35.0 3.48e-01 82.7% 64.1%
5071666 221.1.1.35 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Urm1 0.53 45.0 4.09e-01 97.3% 86.7%
4953349 239.1.1.15 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.53 44.0 4.24e-01 98.7% 81.2%
3183474 221.3.1.0 a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains 0.52 41.0 4.35e-01 98.7% 100.0%
3308224 239.4.1.0 beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain 0.51 46.0 4.21e-01 100.0% 81.0%
3629357 221.4.1.18 a+b two layers › beta-Grasp › Nudix › Nudix › NUDT9_N 0.51 44.0 3.11e-01 100.0% 40.8%
5009614 239.4.1.3 beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N_2 0.50 41.0 3.87e-01 92.0% 84.2%
3974914 7089.1.1.4 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › FlgI 0.50 38.0 3.35e-01 82.7% 75.7%
3479306 221.1.1.31 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › NLE 0.50 42.0 3.95e-01 96.0% 97.9%
D3 high residues 322-436
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 29.0 3.45e-01 83.5% 69.3%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 39.0 3.95e-01 91.3% 73.7%
4lduA02 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.54 32.0 3.38e-01 92.2% 64.2%
7a6pB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 40.0 3.85e-01 99.1% 70.3%
1d06A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 40.0 3.90e-01 99.1% 74.6%
3mr0A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 38.0 3.90e-01 95.7% 83.6%
4r3aA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 40.0 3.50e-01 99.1% 55.7%
2gj3A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 39.0 3.94e-01 99.1% 82.4%
3mqqB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 38.0 3.85e-01 98.3% 80.5%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4147984 3121.1.1.0 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain 0.89 84.0 8.15e-01 98.3% 100.0%
5049662 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.53 41.0 4.11e-01 99.1% 82.6%
3959244 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.53 38.0 4.18e-01 93.9% 96.7%
5021978 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.53 39.0 4.07e-01 95.7% 86.7%
4959266 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.52 40.0 3.09e-01 98.3% 35.1%
4986904 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.51 39.0 3.09e-01 99.1% 37.3%
D4 medium residues 165-239
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 43.0 4.72e-01 80.0% 75.4%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 43.0 4.69e-01 89.3% 75.8%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.69 40.0 4.41e-01 81.3% 71.7%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 42.0 4.47e-01 81.3% 70.8%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 46.0 5.25e-01 96.0% 100.0%
4gl6A01 3.10.450.570 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Domain of unknown function (DUF5037), N-terminal subdomain 0.64 45.0 4.42e-01 74.7% 68.3%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 41.0 4.35e-01 81.3% 75.0%
4oelB00 2.40.50.170 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Cysteine proteinases. Chain C 0.63 41.0 4.32e-01 78.7% 73.9%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.62 39.0 4.24e-01 74.7% 76.2%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 39.0 4.74e-01 74.7% 100.0%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 46.0 2.84e-01 81.3% 23.1%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 45.0 4.53e-01 96.0% 76.9%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 36.0 3.92e-01 78.7% 74.6%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.60 36.0 3.26e-01 78.7% 42.3%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 45.0 4.55e-01 80.0% 98.7%
1o5yA00 3.10.690.10 Alpha Beta › Roll › Bifunctional nuclease domain › Bifunctional nuclease domain 0.59 44.0 3.66e-01 82.7% 64.3%
3mqgA02 2.20.70.110 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.58 28.0 3.56e-01 77.3% 82.1%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 35.0 3.46e-01 74.7% 56.8%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 4.12e-01 90.7% 76.7%
6cnhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 35.0 3.45e-01 70.7% 57.5%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 39.0 4.07e-01 77.3% 79.1%
6jy5B00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.56 43.0 4.16e-01 81.3% 93.9%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.55 41.0 4.12e-01 80.0% 77.6%
2fgeA01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.55 40.0 2.78e-01 77.3% 92.4%
3al9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 38.0 2.39e-01 81.3% 12.1%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 36.0 3.32e-01 76.0% 52.6%
2fxtA00 3.10.450.240 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 43.0 3.30e-01 92.0% 94.3%
3j7yD01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 47.0 4.18e-01 97.3% 84.9%
1x49A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 37.0 3.84e-01 76.0% 80.0%
3oulA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 39.0 2.89e-01 81.3% 57.7%
1jqpA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 43.0 3.04e-01 90.7% 29.4%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.53 36.0 3.26e-01 72.0% 95.4%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.52 40.0 3.62e-01 82.7% 62.5%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.52 39.0 4.01e-01 80.0% 82.4%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 38.0 3.27e-01 80.0% 89.2%
5w3xD01 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.52 40.0 4.23e-01 86.7% 93.8%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 37.0 3.85e-01 100.0% 85.1%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.51 38.0 3.36e-01 77.3% 57.8%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 3.25e-01 81.3% 51.9%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 36.0 3.65e-01 98.7% 76.7%
1vwxH02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.51 36.0 3.33e-01 77.3% 80.6%
1tqzA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 36.0 3.20e-01 78.7% 71.5%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 36.0 3.40e-01 82.7% 62.6%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 38.0 3.44e-01 82.7% 82.1%
3uueA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 38.0 2.62e-01 82.7% 94.6%
3grdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 36.0 3.03e-01 76.0% 62.9%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4452123 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.95 84.0 7.48e-01 94.7% 69.0%
3415836 209.1.1.0 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.77 42.0 3.71e-01 76.0% 38.1%
3742938 4.1.1.102 beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.72 44.0 4.68e-01 86.7% 70.8%
3694693 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.70 47.0 5.07e-01 89.3% 81.5%
3515504 2.1.1.12 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.68 43.0 4.77e-01 76.0% 81.4%
3229399 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.67 40.0 2.57e-01 72.0% 13.1%
5044805 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.65 40.0 4.13e-01 76.0% 65.7%
4983184 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 47.0 5.17e-01 94.7% 100.0%
4779630 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.63 41.0 4.32e-01 78.7% 73.9%
223688 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 38.0 4.54e-01 82.7% 100.0%
4937122 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.63 37.0 3.79e-01 77.3% 58.7%
5016548 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 51.0 4.76e-01 90.7% 98.9%
3319979 2003.1.3.26 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FMO-like, NAD_binding_8 0.62 49.0 3.04e-01 84.0% 95.3%
4973274 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.62 44.0 4.96e-01 90.7% 100.0%
4940372 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.62 47.0 4.89e-01 94.7% 88.6%
3709493 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 49.0 4.07e-01 100.0% 49.2%
5036328 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 45.0 4.30e-01 77.3% 92.9%
4981041 375.1.1.299 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.61 36.0 4.13e-01 80.0% 86.0%
4023011 2003.1.3.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › NAD_binding_8 0.61 46.0 3.30e-01 81.3% 74.0%
3291057 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 38.0 3.99e-01 76.0% 68.6%
4149372 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 47.0 5.01e-01 98.7% 96.9%
3243378 2.1.1.347 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30115 0.60 46.0 4.23e-01 81.3% 66.3%
5049620 304.106.1.0 a+b two layers › Alpha-beta plaits › Hypothetical protein PH1602 › Hypothetical protein PH1602 0.60 37.0 2.34e-01 80.0% 11.3%
4399169 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.59 45.0 4.93e-01 93.3% 100.0%
591 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.59 45.0 4.56e-01 81.3% 98.7%
3923839 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.84e-01 86.7% 91.4%
4945674 2.1.1.252 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2_C 0.58 48.0 5.01e-01 98.7% 97.1%
3552202 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.58 44.0 2.92e-01 80.0% 84.5%
3798917 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.58 42.0 4.65e-01 90.7% 96.7%
5065184 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 32.0 3.65e-01 70.7% 82.2%
3251601 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 44.0 4.41e-01 80.0% 88.0%
3787501 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.57 42.0 3.42e-01 77.3% 94.3%
3797107 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 44.0 4.11e-01 82.7% 84.2%
4004698 2.1.1.135 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.57 41.0 4.17e-01 76.0% 98.7%
3313682 708.1.1.2 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › WRKY 0.57 37.0 3.98e-01 74.7% 76.9%
3881397 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.57 35.0 3.95e-01 76.0% 83.6%
3528541 708.1.2.9 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › YPEH2ZP 0.57 43.0 3.79e-01 82.7% 75.7%
3615013 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 45.0 3.85e-01 84.0% 88.7%
4504508 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.57 47.0 4.55e-01 100.0% 80.0%
4931657 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.57 46.0 4.54e-01 98.7% 83.7%
4236717 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.56 45.0 3.82e-01 85.3% 90.8%
5044263 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 46.0 4.78e-01 97.3% 97.1%
4422553 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.56 42.0 2.46e-01 80.0% 36.5%
4255589 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.56 41.0 3.78e-01 78.7% 96.0%
3574409 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.56 39.0 3.72e-01 78.7% 62.2%
4315771 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.55 44.0 4.68e-01 98.7% 100.0%
331968 4.1.1.55 beta barrels › SH3 › SH3 › SH3 › DUF1653 0.55 39.0 3.93e-01 78.7% 73.1%
3942738 295.1.1.29 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › YjeJ 0.55 38.0 3.04e-01 81.3% 35.5%
2642946 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.55 47.0 4.48e-01 100.0% 80.2%
4875999 309.1.1.2 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16,Peptidase_M16_C 0.54 39.0 2.60e-01 76.0% 84.1%
4483150 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.54 43.0 3.47e-01 92.0% 72.5%
3441121 708.1.1.2 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › WRKY 0.54 42.0 4.36e-01 85.3% 90.0%
4602962 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.53 48.0 3.82e-01 100.0% 68.0%
3507420 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 40.0 3.70e-01 80.0% 81.1%
4853112 708.1.1.2 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › WRKY 0.53 43.0 4.07e-01 86.7% 78.4%
4532014 236.1.1.0 beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain 0.53 35.0 2.90e-01 76.0% 36.4%
4160115 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.53 48.0 4.03e-01 100.0% 73.6%
None 0.53 42.0 3.97e-01 85.3% 86.7%
3784769 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.53 37.0 2.09e-01 73.3% 44.7%
3245145 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 41.0 2.82e-01 93.3% 63.8%
3673266 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 41.0 4.02e-01 88.0% 82.4%
3764041 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.50 34.0 3.41e-01 76.0% 67.5%