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MG189906.1__ATS92413.1__DLP05_037__00036
Bact-VirMG189906.1__ATS92413.1__DLP05_037__00036
Identity
- Accession:
- MG189906 ↗
- Kingdom:
- phage
Quality
76.5
mean pLDDT
Taxonomy
TaxID: 2044561
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-41
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ni5A02 | 1.20.59.20 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › | 0.74 | 63.0 | 4.95e-01 | 100.0% | 64.0% |
| 8e7cA02 | 1.10.1840.10 | Mainly Alpha › Orthogonal Bundle › main proteinase (3clpro) structure, domain 3 › main proteinase (3clpro) structure, domain 3 | 0.72 | 56.0 | 4.33e-01 | 92.3% | 80.6% |
| 1ryp100 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.70 | 57.0 | 3.64e-01 | 100.0% | 27.0% |
| 2vy1A00 | 1.10.4180.10 | Mainly Alpha › Orthogonal Bundle › Protein LEAFY › Protein LEAFY | 0.68 | 57.0 | 3.79e-01 | 94.9% | 22.7% |
| 3dkqA02 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.67 | 48.0 | 4.54e-01 | 94.9% | 63.8% |
| 2bbwA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 54.0 | 3.43e-01 | 97.4% | 21.8% |
| 4dqnA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.66 | 56.0 | 3.77e-01 | 100.0% | 50.0% |
| 4c2dA02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.66 | 55.0 | 4.39e-01 | 100.0% | 94.1% |
| 3b40A02 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.66 | 55.0 | 4.80e-01 | 92.3% | 93.1% |
| 16vpA00 | 1.10.1290.10 | Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF) | 0.65 | 56.0 | 3.32e-01 | 100.0% | 53.7% |
| 1is8A01 | 1.10.286.10 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain | 0.64 | 51.0 | 4.61e-01 | 97.4% | 68.3% |
| 1i5nB00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.63 | 53.0 | 3.78e-01 | 100.0% | 57.3% |
| 4uqfG01 | 1.10.286.10 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain | 0.63 | 50.0 | 4.73e-01 | 100.0% | 80.8% |
| 2p0tA02 | 1.10.60.30 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains | 0.62 | 49.0 | 4.07e-01 | 92.3% | 48.6% |
| 1ig3A02 | 3.40.50.10240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain | 0.61 | 51.0 | 3.48e-01 | 97.4% | 51.0% |
| 1x93A01 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.59 | 39.0 | 4.09e-01 | 82.1% | 77.1% |
| 2hzpA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.58 | 50.0 | 3.25e-01 | 97.4% | 48.9% |
| 1h2tC03 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.58 | 47.0 | 2.94e-01 | 92.3% | 28.1% |
| 7d1tA01 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.56 | 45.0 | 2.97e-01 | 92.3% | 23.1% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3279358 | 3668.1.1.1 ↗ | alpha arrays › Negative regulator RsdA N-terminal domain › Negative regulator RsdA N-terminal domain › Negative regulator RsdA N-terminal domain › RsdA_SigD_bd | 0.80 | 46.0 | 4.65e-01 | 79.5% | 55.0% |
| 5027571 | 2486.1.1.3 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans | 0.77 | 59.0 | 3.28e-01 | 84.6% | 6.0% |
| 4061974 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.76 | 63.0 | 4.93e-01 | 100.0% | 61.1% |
| 3378446 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.74 | 53.0 | 3.12e-01 | 76.9% | 10.7% |
| 5071094 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 60.0 | 4.89e-01 | 100.0% | 66.3% |
| 3717789 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.72 | 59.0 | 4.91e-01 | 94.9% | 92.9% |
| 4116764 | 101.1.2.840 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF29821 | 0.69 | 57.0 | 4.09e-01 | 94.9% | 63.5% |
| 3998931 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.66 | 45.0 | 3.30e-01 | 82.1% | 25.7% |
| 3838225 | 129.1.1.21 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › Competence | 0.65 | 52.0 | 3.12e-01 | 94.9% | 12.0% |
| 3963134 | 605.4.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › DUF202 | 0.65 | 51.0 | 3.73e-01 | 87.2% | 83.8% |
| 3804997 | 568.1.1.8 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related › GCK | 0.64 | 54.0 | 3.82e-01 | 92.3% | 99.1% |
| 3771911 | 109.4.1.1512 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tcp11 | 0.64 | 57.0 | 3.63e-01 | 100.0% | 39.5% |
| 4828355 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.62 | 48.0 | 3.07e-01 | 94.9% | 68.8% |
| 3735902 | 881.1.1.2 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1 | 0.61 | 52.0 | 3.31e-01 | 97.4% | 53.3% |
| 3975557 | 3782.1.1.0 ↗ | a+b duplicates or obligate multimers › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related | 0.59 | 47.0 | 4.06e-01 | 92.3% | 66.2% |
| 3533348 | 3476.1.1.0 ↗ | alpha arrays › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain › RecQL4 helicase N-terminal domain | 0.58 | 41.0 | 3.55e-01 | 84.6% | 41.3% |
| 4547675 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.58 | 48.0 | 4.84e-01 | 100.0% | 90.0% |
| 4682789 | 2498.4.1.1 ↗ | mixed a+b and a/b › Zincin-like › HSP90 C-terminal domain (C-terminal part of Pfam 00183) › HSP90 C-terminal domain (C-terminal part of Pfam 00183) › HSP90 | 0.58 | 51.0 | 3.45e-01 | 100.0% | 66.2% |