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MG198783.1__ATW59036.1__PBI_MAHDIA_37__00037

Bact-Vir

MG198783.1__ATW59036.1__PBI_MAHDIA_37__00037

Identity

Accession:
MG198783 ↗
Kingdom:
phage

Quality

78.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gustavvirus› Gordonia_phage_Mahdia

TaxID: 2047873

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 481-709
PDB
Domain cluster: rep: LD_Run2_08_scaffold_35_prodigal-single.1__X__X__00177__D121-323
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13481.13 best AAA_25 113.3 1.60e-32 70.3% 87.2%
D2 high residues 734-827
PDB
Domain cluster: representative
CATH (83)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3r4kB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 53.0 6.37e-01 79.8% 98.4%
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 51.0 6.21e-01 77.7% 96.8%
5jbrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 55.0 5.74e-01 80.9% 77.9%
2mh2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 52.0 6.27e-01 75.5% 100.0%
2fxaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 53.0 4.36e-01 80.9% 41.7%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 50.0 5.51e-01 76.6% 79.5%
1ku9B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 52.0 5.46e-01 78.7% 74.7%
2v9vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 47.0 5.67e-01 74.5% 96.7%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 54.0 5.53e-01 78.7% 75.8%
4o5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 52.0 5.87e-01 79.8% 93.0%
2dk5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 52.0 6.03e-01 77.7% 100.0%
2vxzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 50.0 5.93e-01 77.7% 97.0%
3lstA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 50.0 5.18e-01 83.0% 73.3%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 53.0 5.34e-01 81.9% 72.3%
3pqkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 54.0 5.30e-01 83.0% 69.7%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 52.0 4.54e-01 81.9% 48.6%
3e6mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 54.0 4.56e-01 81.9% 47.9%
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 53.0 5.60e-01 81.9% 82.1%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 54.0 4.68e-01 83.0% 50.7%
2lsoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 59.0 6.26e-01 85.1% 95.2%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 52.0 5.55e-01 77.7% 82.9%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 53.0 5.43e-01 80.9% 77.8%
3g3zA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 49.0 5.80e-01 76.6% 100.0%
4esjA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 51.0 5.22e-01 77.7% 74.4%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 53.0 5.36e-01 85.1% 75.5%
1ucrB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 50.0 5.57e-01 77.7% 89.3%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 48.0 5.13e-01 78.7% 78.8%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 48.0 5.27e-01 76.6% 83.1%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 54.0 4.54e-01 83.0% 48.7%
2y75A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 57.0 5.21e-01 94.7% 64.0%
4gcvC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 53.0 4.53e-01 86.2% 50.4%
1ussA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 54.0 5.59e-01 78.7% 85.2%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 54.0 4.66e-01 83.0% 52.1%
3bz6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 55.0 5.62e-01 79.8% 92.2%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 52.0 4.58e-01 80.9% 52.6%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 51.0 5.19e-01 80.9% 75.3%
2fbiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 53.0 4.62e-01 81.9% 53.7%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.71 50.0 5.74e-01 77.7% 98.6%
5dcaA11 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 57.0 5.46e-01 84.0% 90.5%
1lj9B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 53.0 4.56e-01 83.0% 51.4%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 53.0 4.66e-01 81.9% 55.3%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 51.0 5.14e-01 84.0% 75.3%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 53.0 5.36e-01 86.2% 79.6%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 55.0 5.79e-01 83.0% 91.7%
2xzn800 3.30.63.20 Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › 0.70 44.0 4.50e-01 78.7% 64.5%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 54.0 4.68e-01 84.0% 55.1%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 52.0 4.67e-01 83.0% 57.1%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 52.0 5.51e-01 78.7% 86.9%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 53.0 5.47e-01 83.0% 83.3%
3lfkD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 48.0 4.59e-01 81.9% 60.9%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 53.0 4.64e-01 84.0% 54.7%
2jscB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 48.0 5.19e-01 80.9% 83.7%
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 47.0 4.94e-01 78.7% 75.9%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 51.0 4.51e-01 83.0% 53.7%
2qvoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 50.0 5.20e-01 79.8% 81.6%
1vtnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 57.0 5.54e-01 88.3% 92.2%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 50.0 5.29e-01 80.9% 85.7%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 49.0 5.18e-01 78.7% 82.4%
3to7A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 46.0 4.98e-01 83.0% 81.5%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 51.0 5.02e-01 80.9% 73.3%
2f2eA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 51.0 5.19e-01 83.0% 80.2%
2jt1A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 48.0 5.41e-01 78.7% 97.2%
4xrfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 51.0 4.40e-01 83.0% 52.1%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 5.17e-01 84.0% 77.0%
2obpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 51.0 5.45e-01 80.9% 92.6%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 46.0 4.86e-01 81.9% 80.0%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 52.0 4.74e-01 85.1% 82.7%
4etsA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 5.13e-01 78.7% 85.1%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 52.0 5.16e-01 86.2% 88.8%
5c17A00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.65 54.0 4.14e-01 88.3% 68.0%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 56.0 5.45e-01 98.9% 84.6%
2p6rA03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.65 58.0 4.42e-01 98.9% 65.6%
3htuA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 5.19e-01 77.7% 97.3%
3jtgA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 46.0 4.86e-01 78.7% 100.0%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 4.80e-01 91.5% 70.8%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 49.0 4.13e-01 83.0% 77.5%
1k78B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 46.0 4.52e-01 80.9% 82.4%
3t5xA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 4.80e-01 77.7% 100.0%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.59 44.0 4.37e-01 80.9% 76.2%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.54 30.0 3.72e-01 80.9% 86.9%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.53 35.0 3.58e-01 78.7% 68.1%
6zd1A01 1.10.132.70 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.51 38.0 3.22e-01 78.7% 86.0%
3he0B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 37.0 3.05e-01 78.7% 53.9%
ECOD (100)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4994269 101.1.2.673 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N 0.80 52.0 5.48e-01 78.7% 72.9%
5012309 101.1.2.903 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_29 0.78 49.0 5.57e-01 77.7% 84.3%
5067395 101.1.2.673 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N 0.78 57.0 6.18e-01 90.4% 90.0%
4949735 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.77 53.0 5.60e-01 83.0% 78.8%
4126575 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.76 53.0 4.53e-01 80.9% 46.9%
4937866 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 52.0 5.43e-01 80.9% 78.8%
5057920 101.1.2.54 ↗ alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.74 57.0 6.00e-01 80.9% 91.8%
4984339 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.74 51.0 5.62e-01 81.9% 88.0%
4931502 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 52.0 5.33e-01 80.9% 75.6%
4966320 101.1.2.884 ↗ alpha arrays › HTH › HTH › winged helix domain › UPF0122 0.74 53.0 5.19e-01 81.9% 68.0%
4974684 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 52.0 5.12e-01 80.9% 68.0%
3459794 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.74 56.0 5.54e-01 80.9% 82.0%
5073938 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.74 55.0 5.80e-01 86.2% 85.9%
4928997 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 59.0 6.06e-01 84.0% 95.6%
4015761 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 55.0 5.56e-01 86.2% 77.9%
5011613 101.1.2.225 ↗ alpha arrays › HTH › HTH › winged helix domain › F-93_WHD 0.73 54.0 5.44e-01 81.9% 75.8%
5011599 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.73 50.0 5.07e-01 80.9% 70.5%
5035474 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.73 52.0 5.66e-01 85.1% 87.5%
4321924 101.1.2.178 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.73 57.0 5.73e-01 83.0% 86.3%
5057033 101.1.2.751 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF6293_C 0.73 53.0 5.31e-01 81.9% 74.7%
4096141 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.73 57.0 5.85e-01 91.5% 86.7%
3285369 109.4.1.2998 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF25872 0.72 53.0 3.35e-01 81.9% 15.5%
3392763 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 56.0 5.85e-01 80.9% 91.8%
3587362 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.72 52.0 4.48e-01 81.9% 50.4%
4942972 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 55.0 5.90e-01 79.8% 95.0%
4956921 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.72 53.0 5.58e-01 81.9% 84.7%
3402809 101.1.2.160 ↗ alpha arrays › HTH › HTH › winged helix domain › BLACT_WH 0.72 54.0 5.65e-01 79.8% 87.1%
5039413 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.72 52.0 4.67e-01 81.9% 56.0%
4416138 101.1.2.59 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF480 0.72 55.0 4.74e-01 80.9% 64.1%
5007348 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 52.0 4.40e-01 79.8% 47.3%
4649222 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.72 54.0 4.75e-01 83.0% 56.2%
4996058 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.72 54.0 5.02e-01 86.2% 64.3%
5029366 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 51.0 5.39e-01 79.8% 82.4%
4638765 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.71 54.0 4.68e-01 83.0% 53.2%
5010374 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 53.0 5.35e-01 78.7% 80.0%
4962681 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.71 53.0 5.36e-01 86.2% 76.8%
4959083 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 50.0 4.08e-01 80.9% 40.0%
3960825 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.71 54.0 4.55e-01 83.0% 49.3%
3288926 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.71 54.0 4.60e-01 81.9% 51.0%
4527970 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.71 57.0 4.41e-01 85.1% 45.5%
4018469 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 55.0 5.30e-01 81.9% 77.1%
3695839 101.1.2.160 ↗ alpha arrays › HTH › HTH › winged helix domain › BLACT_WH 0.71 53.0 5.82e-01 77.7% 100.0%
4951618 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.71 51.0 4.82e-01 80.9% 63.6%
4951153 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.71 51.0 5.02e-01 80.9% 70.0%
5071120 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.71 53.0 5.55e-01 81.9% 85.9%
3983904 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.71 53.0 5.09e-01 81.9% 69.5%
4193660 101.1.2.26 ↗ alpha arrays › HTH › HTH › winged helix domain › HxlR 0.71 51.0 4.38e-01 81.9% 49.0%
5069901 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 51.0 5.20e-01 80.9% 77.8%
3951002 101.1.2.54 ↗ alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.70 56.0 4.90e-01 87.2% 58.5%
4984968 101.1.2.751 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF6293_C 0.70 55.0 5.67e-01 84.0% 86.7%
3603379 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 50.0 5.34e-01 83.0% 86.3%
4993511 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.70 53.0 5.48e-01 83.0% 83.3%
5081044 101.1.2.26 ↗ alpha arrays › HTH › HTH › winged helix domain › HxlR 0.70 51.0 5.32e-01 83.0% 80.9%
5030237 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 51.0 5.46e-01 79.8% 88.7%
3400082 101.1.2.109 ↗ alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.70 54.0 5.29e-01 86.2% 76.0%
4203113 101.1.2.281 ↗ alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.70 50.0 5.07e-01 81.9% 74.7%
4982798 101.1.2.178 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.70 57.0 5.82e-01 86.2% 90.0%
4992389 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 54.0 5.45e-01 91.5% 81.1%
None — 0.69 56.0 5.41e-01 86.2% 96.2%
3971712 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.69 52.0 4.60e-01 84.0% 56.2%
3836863 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.69 53.0 4.51e-01 80.9% 58.0%
4940859 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 57.0 5.90e-01 94.7% 92.2%
3797522 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 51.0 5.00e-01 76.6% 76.0%
5045986 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 56.0 5.76e-01 85.1% 92.2%
4990677 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.69 51.0 5.40e-01 81.9% 85.9%
5017587 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 52.0 5.42e-01 89.4% 87.1%
4976901 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 52.0 5.37e-01 80.9% 83.3%
5082317 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.69 54.0 5.54e-01 85.1% 86.7%
3365155 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.69 53.0 4.88e-01 81.9% 75.0%
2600 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.69 54.0 4.51e-01 91.5% 51.0%
3970678 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 56.0 4.55e-01 87.2% 91.8%
5049142 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 60.0 5.35e-01 95.7% 86.2%
3954543 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.68 53.0 4.55e-01 81.9% 53.8%
3661546 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.68 53.0 4.79e-01 81.9% 64.8%
4241107 101.1.2.90 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.68 50.0 3.68e-01 76.6% 58.3%
5048954 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 51.0 4.75e-01 78.7% 65.2%
4983039 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.68 52.0 5.16e-01 81.9% 83.8%
4037999 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.68 52.0 5.23e-01 81.9% 81.1%
3281567 101.1.2.26 ↗ alpha arrays › HTH › HTH › winged helix domain › HxlR 0.68 50.0 4.49e-01 81.9% 57.6%
4339648 101.1.2.852 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27213 0.67 54.0 5.44e-01 86.2% 93.7%
3971106 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.67 53.0 5.22e-01 84.0% 78.0%
5047067 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 50.0 5.20e-01 78.7% 89.4%
5038557 101.1.2.934 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.66 53.0 5.19e-01 85.1% 79.0%
4972222 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 55.0 5.37e-01 94.7% 82.0%
3451047 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.66 51.0 4.70e-01 81.9% 70.8%
4976955 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.66 57.0 4.04e-01 98.9% 32.8%
3726615 101.1.2.520 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7779 0.65 51.0 4.76e-01 83.0% 76.5%
3365938 101.1.2.37 ↗ alpha arrays › HTH › HTH › winged helix domain › E2F_TDP 0.65 48.0 4.90e-01 76.6% 82.2%
4968041 101.1.2.26 ↗ alpha arrays › HTH › HTH › winged helix domain › HxlR 0.65 57.0 4.93e-01 95.7% 100.0%
4964823 101.1.2.929 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_2833_C 0.65 60.0 4.43e-01 100.0% 86.1%
4998645 101.1.2.673 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N 0.65 54.0 5.26e-01 90.4% 82.9%
3875839 101.1.2.101 ↗ alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.64 51.0 4.79e-01 86.2% 76.5%
3208249 101.1.2.311 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA12 0.63 46.0 4.56e-01 81.9% 72.0%
4535381 101.1.2.603 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9 0.63 58.0 4.30e-01 98.9% 48.9%
4959047 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 44.0 4.80e-01 81.9% 90.7%
5045315 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 56.0 5.27e-01 100.0% 85.2%
4163974 101.1.2.59 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF480 0.62 57.0 4.22e-01 98.9% 95.6%
4961793 101.1.2.929 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_2833_C 0.61 55.0 3.84e-01 100.0% 72.5%
4580985 101.1.2.603 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9 0.60 53.0 3.54e-01 97.9% 63.2%
3573313 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.57 42.0 4.50e-01 79.8% 91.3%
D3 medium residues 1-108
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vt8A00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.70 37.0 3.38e-01 83.3% 37.8%
2gnrA01 6.10.30.10 Special › Helix non-globular › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › 0.64 32.0 3.79e-01 81.5% 71.0%
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.64 36.0 3.99e-01 88.0% 69.9%
1rniA01 3.30.720.160 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Bifunctional DNA primase/polymerase, N-terminal 0.60 35.0 4.18e-01 80.6% 88.6%
1x9nA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.59 33.0 3.68e-01 88.0% 69.0%
2mkyA00 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.58 25.0 3.22e-01 88.0% 67.2%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 42.0 4.24e-01 91.7% 82.0%
1hufA00 3.30.1570.10 Alpha Beta › 2-Layer Sandwich › YopH tyrosine phosphatase N-terminal domain › Protein-tyrosine phosphatase, YopH, N-terminal domain 0.53 39.0 3.77e-01 77.8% 100.0%
5u3fB01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.53 35.0 3.24e-01 90.7% 52.9%
3afhA02 3.90.800.10 Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 0.53 30.0 3.14e-01 100.0% 56.7%
4dw8A02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.52 33.0 3.41e-01 84.3% 67.0%
3p0jA03 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.51 38.0 4.03e-01 79.6% 92.6%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3487089 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 36.0 3.61e-01 88.0% 60.9%
4399557 4020.1.1.1 ↗ a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › Aminotran_4 0.56 36.0 3.46e-01 91.7% 56.0%
3574410 6.1.1.4 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.55 43.0 3.74e-01 84.3% 84.1%
4964887 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.53 45.0 4.42e-01 94.4% 84.2%
5050070 2011.1.1.6 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.52 44.0 3.35e-01 96.3% 93.7%
3929425 109.4.1.80 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRN3 0.50 40.0 2.82e-01 85.2% 88.4%
3475404 2011.1.1.6 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.50 36.0 2.99e-01 75.9% 63.5%
4134794 2011.1.1.6 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.50 37.0 2.86e-01 78.7% 97.0%
D4 medium residues 109-277
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09250.17 best Prim-Pol 31.5 3.10e-07 71.6% 60.1%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4959587 862.1.1.3 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol 0.68 46.0 4.66e-01 78.1% 67.6%