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MG209611.1__ATW59306.1__Cl131_gp038__00038

Bact-Vir

MG209611.1__ATW59306.1__Cl131_gp038__00038

Identity

Accession:
MG209611 ↗
Kingdom:
phage

Quality

65.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-178
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09979.15 best DUF2213 115.2 4.50e-33 88.1% 97.6%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qfjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.71 37.0 4.89e-01 83.6% 95.6%
4wqmA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.67 36.0 4.73e-01 84.7% 93.9%
1a8pA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 36.0 4.71e-01 84.2% 100.0%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 37.0 4.75e-01 84.2% 99.0%
1krhA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 36.0 4.69e-01 84.2% 100.0%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 30.0 4.26e-01 87.6% 98.7%
5tr9A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 35.0 4.61e-01 84.7% 100.0%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.63 34.0 4.52e-01 82.5% 100.0%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 35.0 4.48e-01 84.7% 94.2%
1tvcA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 36.0 4.48e-01 84.7% 93.6%
1cqxA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 37.0 4.54e-01 84.7% 96.4%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 27.0 3.83e-01 87.0% 91.5%
2ia0B02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.58 28.0 3.65e-01 84.2% 79.8%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 34.0 4.13e-01 84.2% 92.5%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 35.0 4.40e-01 83.1% 100.0%
1r5bA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 30.0 4.05e-01 97.2% 97.8%
2oz4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 31.0 3.94e-01 86.4% 91.8%
1dn0D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 31.0 3.93e-01 86.4% 94.7%
2b4vA03 3.30.70.1970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 28.0 3.59e-01 85.3% 81.8%
1sjrA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 27.0 3.33e-01 84.2% 71.3%
4yhbA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 36.0 4.13e-01 84.2% 90.7%
4hspA00 2.40.50.870 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function (DUF3299) 0.54 29.0 3.21e-01 87.6% 62.4%
5h5zA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 28.0 3.69e-01 85.9% 97.7%
2mklC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 31.0 3.82e-01 87.0% 94.3%
3f62A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 31.0 3.76e-01 85.3% 90.7%
2mq8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.53 30.0 3.57e-01 82.5% 83.9%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 23.0 3.31e-01 83.1% 94.7%
8ediA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 30.0 3.64e-01 85.9% 94.2%
4owwB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 26.0 3.28e-01 91.5% 80.4%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3945977 50.1.1.4 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › DUF2213 0.92 75.0 7.79e-01 83.1% 96.4%
3166306 50.1.1.4 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › DUF2213 0.90 74.0 7.96e-01 84.2% 98.7%
3964948 1.1.16.4 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › Peptidase_S78 0.85 58.0 6.93e-01 83.1% 98.4%
5003309 50.1.1.0 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin 0.83 59.0 6.93e-01 81.4% 99.2%
3964748 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.82 49.0 6.33e-01 80.8% 100.0%
4929754 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.81 58.0 6.74e-01 81.9% 99.2%
3585229 50.1.1.2 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S77 0.79 60.0 6.74e-01 81.4% 98.6%
4995675 50.1.1.0 beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin 0.76 68.0 7.04e-01 97.2% 100.0%
5074238 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 33.0 4.78e-01 84.7% 100.0%
3970319 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.67 30.0 4.16e-01 81.9% 82.2%
4303291 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.67 36.0 4.71e-01 84.7% 92.0%
4064427 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 34.0 4.64e-01 83.1% 96.7%
3969656 1.1.7.24 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.66 35.0 4.76e-01 82.5% 100.0%
4381190 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.65 37.0 4.63e-01 84.7% 92.4%
4542543 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.64 37.0 4.52e-01 84.7% 89.1%
4453032 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.64 36.0 4.61e-01 84.7% 96.0%
4477675 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.64 35.0 4.43e-01 84.7% 89.5%
3945286 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 36.0 4.56e-01 84.7% 93.3%
3700664 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.63 36.0 4.62e-01 84.7% 98.0%
2455725 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.63 36.0 4.48e-01 84.2% 93.3%
3110426 1.1.7.23 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_9 0.61 37.0 4.68e-01 84.2% 99.1%
3511826 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.61 36.0 4.59e-01 84.7% 99.0%
3186464 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.60 36.0 4.04e-01 84.7% 75.6%
4223333 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 35.0 4.39e-01 84.7% 95.2%
3708890 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.60 34.0 4.28e-01 84.7% 93.3%
3284021 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 36.0 4.49e-01 84.7% 98.2%
3613165 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 33.0 4.11e-01 84.2% 90.5%
3572941 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.59 34.0 4.21e-01 84.2% 94.3%
3555467 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.58 37.0 4.42e-01 84.7% 95.7%
381 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.58 26.0 3.87e-01 92.1% 94.9%
4204456 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.58 26.0 3.83e-01 84.7% 93.8%
3607364 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.58 27.0 3.24e-01 84.7% 62.6%
4141240 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.57 26.0 3.81e-01 92.1% 95.0%
4438356 304.162.1.0 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.57 26.0 3.74e-01 83.1% 98.7%
4070256 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.56 26.0 3.80e-01 91.5% 97.5%
3927948 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 25.0 3.75e-01 87.0% 100.0%
4396747 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.55 26.0 3.71e-01 92.1% 96.2%
5078557 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 30.0 3.40e-01 92.7% 68.1%
3804101 1.1.11.5 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like 0.55 38.0 4.27e-01 94.4% 89.3%
3371009 1.1.11.5 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like 0.55 35.0 3.99e-01 88.1% 83.0%
3814778 1.1.11.5 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like 0.54 37.0 4.21e-01 87.6% 91.9%
4331518 11.1.1.805 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_PDGFR_d4 0.52 32.0 3.87e-01 95.5% 97.3%
4272096 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.52 26.0 3.55e-01 92.1% 94.4%
3600626 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 28.0 3.64e-01 86.4% 93.0%
3397202 11.1.1.53 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON 0.50 39.0 4.11e-01 90.4% 91.0%
3228956 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 30.0 3.62e-01 86.4% 95.2%
D2 high residues 198-285
PDB
Domain cluster: representative
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3391391 4177.1.1.16 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FAP206 0.88 59.0 3.87e-01 73.9% 18.5%
3282879 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.81 55.0 4.14e-01 75.0% 31.0%
3274487 605.1.1.155 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Gpi1 0.55 41.0 3.28e-01 78.4% 73.1%
D3 medium residues 364-419
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7fsfA02 3.30.56.80 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.72 48.0 4.46e-01 100.0% 56.5%
4zbwA02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.63 48.0 4.25e-01 100.0% 55.2%
1td6A03 1.10.472.40 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Hypothetical protein mg237 homolog; domain 3 0.59 44.0 3.88e-01 83.9% 76.1%
5l0wB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 42.0 3.29e-01 82.1% 56.5%
1wgfA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.58 36.0 3.76e-01 96.4% 67.9%
2fnaA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 42.0 3.95e-01 83.9% 81.6%
1v4aA03 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.57 39.0 2.98e-01 75.0% 48.4%
1j09A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.54 38.0 3.98e-01 100.0% 89.6%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.53 44.0 3.32e-01 94.6% 66.4%
1uj8A00 1.10.10.600 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IscX-like 0.53 38.0 3.60e-01 82.1% 63.0%
7n1nB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 43.0 4.19e-01 94.6% 98.4%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.52 43.0 2.92e-01 94.6% 74.0%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3669523 101.1.1.66 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_5 0.62 46.0 4.36e-01 78.6% 75.4%
3348250 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 45.0 3.50e-01 78.6% 42.4%
3512149 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.56 42.0 2.77e-01 80.4% 30.8%
4344730 4310.1.1.1 alpha arrays › Dcp2 box A domain › Dcp2 box A domain › Dcp2 box A domain › DCP2 0.55 37.0 3.11e-01 71.4% 80.0%
5022794 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 42.0 3.65e-01 89.3% 80.0%
4042779 2005.1.1.7 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.53 39.0 2.56e-01 83.9% 72.8%
3441050 101.1.1.295 alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 0.51 40.0 3.85e-01 85.7% 76.9%